Clone Read LE_HBa0112C24_SP6_36622

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0112C24_SP6_36622
Primer
SP6
ID from Seq. Facility
LE_HBa_112_C24-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
456 trimmed for vector and quality, 877 raw
Genbank Accession
DU086413
Sequence
>LE_HBa0112C24_SP6_36622 (raw untrimmed)
GGGGGGATTAGTGACGTATGATAGTTTTTTTTTTTTTAACAATCTCTCTATTTTGTGTACACTAATAATAACTCAAATCTCAAATGATGAACAAAAAAAA
TGACAACTTTAAAAGATCCCTCAATGTGGTAAGAAAAGAATCTAACTGTGGCCTACTCCTGGGCCGAGATTTGATAAGCTTCGTCCTAGATCATTTTTGT
TGAAGGAATTGATTTTTTCTAGCTTTAATCCAGCTCTAAATTTTGATATGAAGTTTTCAGCTTTTGTGTTTACATCTGGGCTTGGACAAAACAATGGTGA
CGGAGCAAACGCCATCCCTTCACCAGCGCCGGCGTCTTCTGCCATCGGGGTGTTGGCGGCTGAATCTATATCTTCAAGTTCAGGAGACCCAGAACGTGAG
CTGAGGGTGCTGTCTATTCTCAAGTAGTCGCCTTGTACTACGAATTTCCAGGCGTGTTTTCTGAAGAATGGGGGTGGTGGAGGTGTCTCTTATATTTTTT
TTTTCTTTTATATTCACTCTTATTATAGTTAGTACATCTATCTCTCGATATTCATCTTCTCTTTCCTTAGAAGTAATGTGCATCTTGGTTTTTATTCTTT
TATTTCTTTTTCTATCTATTTATTCTCGACCCATACAACTCGTTTTGATCTTTCCTTCCTTTTTACTCTTTCTCTTCTCTCTACTTTCACCCTCTTATTT
CATCTAATATCTCCCTCTTGATATCGTACGATCACCTCTTTTCCTATCGCGCCTCCTCTCTCCTGAGCACGCCGTCTCCATGGCTTCATTCTCTTCTCTT
TTTTTTTTTTCTTCTCTTTTCTCCACTTCTCCTTCATCCCGTAACCCCCTCCGTGTACGCATGATAAATGGAGAAAA
>LE_HBa0112C24_SP6_36622 (trimmed for quality and cloning vector)
TTTTTTTTTTTTAACAATCTCTCTATTTTGTGTACACTAATAATAACTCAAATCTCAAATGATGAACAAAAAAAATGACAACTTTAAAAGATCCCTCAAT
GTGGTAAGAAAAGAATCTAACTGTGGCCTACTCCTGGGCCGAGATTTGATAAGCTTCGTCCTAGATCATTTTTGTTGAAGGAATTGATTTTTTCTAGCTT
TAATCCAGCTCTAAATTTTGATATGAAGTTTTCAGCTTTTGTGTTTACATCTGGGCTTGGACAAAACAATGGTGACGGAGCAAACGCCATCCCTTCACCA
GCGCCGGCGTCTTCTGCCATCGGGGTGTTGGCGGCTGAATCTATATCTTCAAGTTCAGGAGACCCAGAACGTGAGCTGAGGGTGCTGTCTATTCTCAAGT
AGTCGCCTTGTACTACGAATTTCCAGGCGTGTTTTCTGAAGAATGGGGGTGGTGGA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.96581
Expected error %
0.519546
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g72790.1 Score 92 E Value 9e-20 Identity 15.20% Align. Length 329bp (72.15%) Frame 1
68414.m08415 hydroxyproline-rich glycoprotein family protein contains proline-rich extensin domains, INTERPRO:IPR002965
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g57070.1 Score 76 E Value 7e-15 Identity 15.10% Align. Length 284bp (62.28%) Frame 1
68418.m07124 hydroxyproline-rich glycoprotein family protein Common family members: At5g26070, At5g19800, At1g72790 [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAN41301.1| Score 92 E Value 3e-18 Identity 15.20% Align. Length 329bp (72.15%) Frame 1
unknown protein [Arabidopsis thaliana] ref|NP_177422.1| hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] gb|AAG51845.1| unknown protein; 15669-13984 [Arabidopsis thaliana] pir||G96752 unknown protein F28P22.2 [imported] - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAL87377.1| Score 92 E Value 3e-18 Identity 15.20% Align. Length 329bp (72.15%) Frame 1
At1g72790/F28P22_2 [Arabidopsis thaliana] gb|AAL50061.1| At1g72790/F28P22_2 [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0112C24
Clone
Clone name
hba-112c24
LE_HBa0112C24
C03HBa0112C24
P112C24
Clone type
BAC
Contamination
none
Estimated length
123,800
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found