Clone Read LE_HBa0106N20_T7_34839

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0106N20_T7_34839
Primer
T7
ID from Seq. Facility
LE_HBa_106_N20-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
629 trimmed for vector and quality, 850 raw
Sequence
>LE_HBa0106N20_T7_34839 (raw untrimmed)
GGTTAACCTCGGTCCCGGGGAATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCACAACACAAGTGCTACCAACCTTTGTTTGGAGTAACATATCCTT
GTAGTCTAGGATTCTGTTAAATTCTGCCACATGATCTCCCATAATTTTCTTTCAAATAAATTTTCTTGTTTTTAAACAAACTGTCTTGCCTACATGAACA
TTCAACTCTTTCCTCACCAATTCTTGTATCTCCCACCCTTTTATACTAGGTTGAGAAATAATCCTACCTTTCAGATACTTGCATAAGAACTTTGAATTAC
ACAAAATATTATTGGTGGTCCTGGTACATTTGTGCCTTGGATTGTATGTCTTGATAGTAAAGTTCTCACTCCTTCCTTCCTTGCTTGCATACAACAGCCA
TGGACAACCACTTTTACACTTCACTCTCACTCTAGTACTCTCATTCACATACTTATCTAACTCAACTCCTTTTTTTATAGCATATTTTGTAACTGCCTCT
CTAAATTTTTTTACACTTTCAAATATCAAACCACACTGCCATATTAAAATATCACAAGAAGAATCATATACCACCCTATTACTCTTCTTTCTCCCCCTGA
AACTCCCTCCTTCAAGTTCATAATCAGAAACAGGTTCTTCTTCATCACTTTGAAAACTATCACAACCAGAACTGTCATAGTATGGCTCATCCTCTATTAG
TTTACCCTTGAAAATCTCTTTTCCCTCTTCCATATTCTTCTTACCATCATCAAATCCAACCTCACCTAAAATAAACCTTTTGGATTTTCCTTACTTCTTC
TACTACTATTTCCTTAAACTTTTCTACACCTTCATCAACATTCTCAAATC
>LE_HBa0106N20_T7_34839 (trimmed for quality and cloning vector)
AGCTTCACAACACAAGTGCTACCAACCTTTGTTTGGAGTAACATATCCTTGTAGTCTAGGATTCTGTTAAATTCTGCCACATGATCTCCCATAATTTTCT
TTCAAATAAATTTTCTTGTTTTTAAACAAACTGTCTTGCCTACATGAACATTCAACTCTTTCCTCACCAATTCTTGTATCTCCCACCCTTTTATACTAGG
TTGAGAAATAATCCTACCTTTCAGATACTTGCATAAGAACTTTGAATTACACAAAATATTATTGGTGGTCCTGGTACATTTGTGCCTTGGATTGTATGTC
TTGATAGTAAAGTTCTCACTCCTTCCTTCCTTGCTTGCATACAACAGCCATGGACAACCACTTTTACACTTCACTCTCACTCTAGTACTCTCATTCACAT
ACTTATCTAACTCAACTCCTTTTTTTATAGCATATTTTGTAACTGCCTCTCTAAATTTTTTTACACTTTCAAATATCAAACCACACTGCCATATTAAAAT
ATCACAAGAAGAATCATATACCACCCTATTACTCTTCTTTCTCCCCCTGAAACTCCCTCCTTCAAGTTCATAATCAGAAACAGGTTCTTCTTCATCACTT
TGAAAACTATCACAACCAGAACTGTCATA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.919483
Expected error %
0.779249
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAW28576.1| Score 179 E Value 5e-44 Identity 15.40% Align. Length 623bp (99.05%) Frame 1
putative gag-pol polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAP53948.1| Score 114 E Value 2e-24 Identity 10.10% Align. Length 602bp (95.71%) Frame 1
putative mutator-like transposase [Oryza sativa (japonica cultivar-group)] ref|NP_921661.1| putative mutator-like transposase [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0106N20
Clone
Clone name
hba-106n20
LE_HBa0106N20
P106N20
Clone type
BAC
Contamination
none
Estimated length
100,787
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found