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Clone Read LE_HBa0106E03_T7_34373

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0106E03_T7_34373
Primer
T7
ID from Seq. Facility
LE_HBa_106_E03-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
643 trimmed for vector and quality, 890 raw
Sequence
>LE_HBa0106E03_T7_34373 (raw untrimmed)
CTAACCTCGGCCCGGGGGGATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGTCATATGTTCTTTACTGTTCTTTTGTTCTGCTCTGAAGGGAAAAAGA
GTTTATACATAAGGTTGGGCTGCCGAGGTGATTGGCCAGACATCAAACCCCCAGGCTGGGATCCATCAACGAGCCTTGATGCATCTTCTCCGCGGTCATA
ACTCATAGCAGAATCACAGTATATGTATCTAAATGAAGCTATTTTTCTCTACCCTTAGGCTCTTGTATCAATGTATCAAAATTAAAAAACATTCTTCTTG
AGGATATCAAGTTGGATATTCTCAACATGATCTTTCTATATTAAGGGAAAGAAAAGACTAAGGTCCTGGCGTGTATTAATTGTCCAGAAAGTTGCCATTG
AGCCCCGAAGGCCATCTGGTTAGTCAGAATTTTTTTATGGAAGATGGTCAATTTTGTATGCTGTGAATAATTGCCACAAATGTTGCTTATATTCATTCTT
TATTCTAATACAGTAACACCTTTTTCATTGTTGTGACTGCATTAGTGAGGTGTTCTTACATACGTATAATATATTTATATCTAATGTTTACATATCACTT
AGCAAAACGAAAGAATGTATTATTAACCAATTCAACCAAATTGAATATATGGATGTAAAGAATAACAATATTTTTTCCCCGTGAAATTTATCTGCATAAT
TGATGAGCATACGTTTAAACAATTCTCCTGAACTTAAAATTATGTGAAAAAGATTAAACTTGAATTTCATGGATATTCTAACCTGCCATTTTTATATAAA
TTTTTGGAGTAGTTATTCAGGAATAATTTCCCGCAAAGGTTACCCCTGATTATATTCATTATAATCTAAATCAATTCAAAAAAATTTTTA
>LE_HBa0106E03_T7_34373 (trimmed for quality and cloning vector)
AGCTTGTCATATGTTCTTTACTGTTCTTTTGTTCTGCTCTGAAGGGAAAAAGAGTTTATACATAAGGTTGGGCTGCCGAGGTGATTGGCCAGACATCAAA
CCCCCAGGCTGGGATCCATCAACGAGCCTTGATGCATCTTCTCCGCGGTCATAACTCATAGCAGAATCACAGTATATGTATCTAAATGAAGCTATTTTTC
TCTACCCTTAGGCTCTTGTATCAATGTATCAAAATTAAAAAACATTCTTCTTGAGGATATCAAGTTGGATATTCTCAACATGATCTTTCTATATTAAGGG
AAAGAAAAGACTAAGGTCCTGGCGTGTATTAATTGTCCAGAAAGTTGCCATTGAGCCCCGAAGGCCATCTGGTTAGTCAGAATTTTTTTATGGAAGATGG
TCAATTTTGTATGCTGTGAATAATTGCCACAAATGTTGCTTATATTCATTCTTTATTCTAATACAGTAACACCTTTTTCATTGTTGTGACTGCATTAGTG
AGGTGTTCTTACATACGTATAATATATTTATATCTAATGTTTACATATCACTTAGCAAAACGAAAGAATGTATTATTAACCAATTCAACCAAATTGAATA
TATGGATGTAAAGAATAACAATATTTTTTCCCCGTGAAATTTA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.954788
Expected error %
0.0639255
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g35500.1 Score 64 E Value 9e-11 Identity 30.90% Align. Length 80bp (12.44%) Frame 3
68415.m04348 shikimate kinase-related low similarity to shikimate kinase precursor from Lycopersicon esculentum [SP|Q00497]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0106E03
Clone
Clone name
hba-106e3
LE_HBa0106E03
C08HBa0106E03
P106E03
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found