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Clone Read LE_HBa0106E03_SP6_34372

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0106E03_SP6_34372
Primer
SP6
ID from Seq. Facility
LE_HBa_106_E03-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
686 trimmed for vector and quality, 885 raw
Sequence
>LE_HBa0106E03_SP6_34372 (raw untrimmed)
TGGGGCAGCTTATTGGTTGAGGCTCCCATCGGCGTCTGTCATCAGAGTCCATTTCCAGGCCTCCGAAATCTTGTGAGGCTATAATTGTTGAAAGACTGCC
TTCTAGAGTCTTTGCAGATCCTTTTGAGCTACAACATTAGATTTTATGGGTTTCTAGCACTGCTACCCGTCATTTTGAGGCTTGTTGTTGTCCACGTTTT
GTTGTAGTTTTCAGGGATGCTGCCGTATTTGGAGATACAAATTTAGAGTTGCCTTCTTTTCTGTCAAACCGCTCGCTTGTTGAGGTTCATCTGGAAGTGG
GTACCAATTTAACATCACAACAGAAGGATGAACTGGAAATACACATGGAACTTCCTCTACATGCACGCTATCAGGTACATCACATAAATAATTCCCAAAA
TTATGTCGGAGTCTCTAAAATATGTTCCAGGCATCCAGTGTAGTCAGTCATTTTTACTCCCCTGAAATTTAAGTTGATACTTGTACAAGAAAAGATGCAT
TAAGTATGTAGGAAGCCATGAATATCTGTTAAGCTTCTCGACTTTATTGTAACATCCCGGCTTCTAACTGGCAGCCACTAGGACATGGATTCTCAAGAGT
TGAATTTGCTTCACCTGACTTATTTCTGCGCTGCAACCTTGAAAGAAAAGAATATGACACGGGCTGTTTGTTTCTGCTAGACAAACAGAATGCTGAATCA
ATTGATACTCACCCTGTGTGGGAAGTACCATGTGGAAATCGAGAACACACTGAAGTTGTATCTGCTTTTACATCCTCTCAGCTCTTGTATCAGCTCTTCC
TCATCATTGTTGGCCCCAATTTAAATGCATCTAAGTAATGTCTTTAAACAATCTCGAATAATTAAGAAATGTACTAAGTTTTTTC
>LE_HBa0106E03_SP6_34372 (trimmed for quality and cloning vector)
GCTCCCATCGGCGTCTGTCATCAGAGTCCATTTCCAGGCCTCCGAAATCTTGTGAGGCTATAATTGTTGAAAGACTGCCTTCTAGAGTCTTTGCAGATCC
TTTTGAGCTACAACATTAGATTTTATGGGTTTCTAGCACTGCTACCCGTCATTTTGAGGCTTGTTGTTGTCCACGTTTTGTTGTAGTTTTCAGGGATGCT
GCCGTATTTGGAGATACAAATTTAGAGTTGCCTTCTTTTCTGTCAAACCGCTCGCTTGTTGAGGTTCATCTGGAAGTGGGTACCAATTTAACATCACAAC
AGAAGGATGAACTGGAAATACACATGGAACTTCCTCTACATGCACGCTATCAGGTACATCACATAAATAATTCCCAAAATTATGTCGGAGTCTCTAAAAT
ATGTTCCAGGCATCCAGTGTAGTCAGTCATTTTTACTCCCCTGAAATTTAAGTTGATACTTGTACAAGAAAAGATGCATTAAGTATGTAGGAAGCCATGA
ATATCTGTTAAGCTTCTCGACTTTATTGTAACATCCCGGCTTCTAACTGGCAGCCACTAGGACATGGATTCTCAAGAGTTGAATTTGCTTCACCTGACTT
ATTTCTGCGCTGCAACCTTGAAAGAAAAGAATATGACACGGGCTGTTTGTTTCTGCTAGACAAACAGAATGCTGAATCAATTGATA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.974858
Expected error %
0.172407
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g46850.1 Score 75 E Value 3e-14 Identity 16.00% Align. Length 299bp (43.59%) Frame 1
68418.m05773 expressed protein ; expression supported by MPSS
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAA97219.1| Score 75 E Value 2e-12 Identity 16.00% Align. Length 299bp (43.59%) Frame 1
unnamed protein product [Arabidopsis thaliana] ref|NP_199497.1| expressed protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0106E03
Clone
Clone name
hba-106e3
LE_HBa0106E03
C08HBa0106E03
P106E03
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found