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Clone Read LE_HBa0104O23_T7_34125

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0104O23_T7_34125
Primer
T7
ID from Seq. Facility
LE_HBa_104_O23-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
694 trimmed for vector and quality, 846 raw
Genbank Accession
DU089334
Sequence
>LE_HBa0104O23_T7_34125 (raw untrimmed)
GGCTCAACCCGGTCCCGCGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGTGAAAAGAGTTTCCAAGAATTGAAAAATATACTCACTTCAACCC
TATATTGACATTACCGGAAGCACCGAATGCTTTTGTGATTTATTATGATGCTTCAAAAATTATTCGTCGTTGTACTTTGATGCAACATGGGAAAGTCATT
GTTTATACTTCAAAACAATTAGAAGTGCATGAGAAGAATTGTCCGACTCATGATTCGGAGTTAGCAATGATAGTGTTTGCCCTAGAGATTTGGAGACATT
ACTTGTATGGTGTTCATGTAGATATGTTTACCGACCATAAAAGTTTGAAATATGTGGTCACTCAAAAGGATTTGAATGTTTTCCAAAAGAGGTGTTTTTG
AAGGATTACAACATGAGTGTCCTCTATCATCCTAGAAAAGCAAATATGGTGGTGGATGCTCTTTGTCGACTATCAATGGGAAGTGTTGCTCGTGTAGAGG
ATGATAAGGAGTTAGTTCGTGATGTTCATACATTGGCCCGATAGGGTGTTCGCTTGGTTGATTTCAATAAAGGTGGTGTAATGTTCATAGTGGTTCTGAA
TCATCTTATATATCATATGTGAAGGCTAAGCAAGATCTTGATTTTGGTATTATTTGACTTAAAGAAGCCAGTTTTTTGAAAAAGCCATCCAGACTTTTTT
TCCCAAAGGAGAGATGGTTGTCTTTCCATAACAAATGTAAATTATGCAATTCAATTTCCATCACGTTGGATAGGGTTTCCATTGCATTCCCCCTTGGGTT
CTAATTATGCTGATCCAATTCCCTGAATTTCCACCCTTATATTATT
>LE_HBa0104O23_T7_34125 (trimmed for quality and cloning vector)
AGCTTGTGAAAAGAGTTTCCAAGAATTGAAAAATATACTCACTTCAACCCTATATTGACATTACCGGAAGCACCGAATGCTTTTGTGATTTATTATGATG
CTTCAAAAATTATTCGTCGTTGTACTTTGATGCAACATGGGAAAGTCATTGTTTATACTTCAAAACAATTAGAAGTGCATGAGAAGAATTGTCCGACTCA
TGATTCGGAGTTAGCAATGATAGTGTTTGCCCTAGAGATTTGGAGACATTACTTGTATGGTGTTCATGTAGATATGTTTACCGACCATAAAAGTTTGAAA
TATGTGGTCACTCAAAAGGATTTGAATGTTTTCCAAAAGAGGTGTTTTTGAAGGATTACAACATGAGTGTCCTCTATCATCCTAGAAAAGCAAATATGGT
GGTGGATGCTCTTTGTCGACTATCAATGGGAAGTGTTGCTCGTGTAGAGGATGATAAGGAGTTAGTTCGTGATGTTCATACATTGGCCCGATAGGGTGTT
CGCTTGGTTGATTTCAATAAAGGTGGTGTAATGTTCATAGTGGTTCTGAATCATCTTATATATCATATGTGAAGGCTAAGCAAGATCTTGATTTTGGTAT
TATTTGACTTAAAGAAGCCAGTTTTTTGAAAAAGCCATCCAGACTTTTTTTCCCAAAGGAGAGATGGTTGTCTTTCCATAACAAATGTAAATTA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.948815
Expected error %
1.13734
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 150 E Value 4e-51 Identity 63.10% Align. Length 603bp (86.89%) Frame 2
putative gag-pol polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 149 E Value 1e-50 Identity 63.10% Align. Length 603bp (86.89%) Frame 2
putative retrotransposon protein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0104O23
Clone
Clone name
hba-104o23
LE_HBa0104O23
C12HBa0104O23
P104O23
Clone type
BAC
Contamination
none
Estimated length
126,541
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found