Clone Read LE_HBa0163D24_SP6_300970

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0163D24_SP6_300970
Primer
SP6
ID from Seq. Facility
LE_HBa_163_D24-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
16 trimmed for vector and quality, 947 raw
Sequence
>LE_HBa0163D24_SP6_300970 (raw untrimmed)
TAGAACTCAGCTTGTCATCCACTAAATTGACACATTAAGGACTTACCTGCAACATTGACTTTCACATACTAAGTAGCTTCACTTTGAGTTCAGCAAAAGC
CAACTTGGATGAGATGATTGTCCATCCTCTCATACC
ATGCCTCTGGGGCTTGTTTTAAACAATACAATGTCTTTGTTTTGAGAGAGCCGAAAACCTCTCA
TGCAGCACCTGATAAATCTTAACGTTACTCTACAAACATATTAAGACCTAGTTTATATATAGATTGTCGAAATTTTTACAATCAGTAGATGAGTCACATA
CAACTTATACATATATTCTAAATCGACTCTAACGAGAGATATTCTTTTTTTTATCAAACTATGATCTAAATTTAAAAACTTTTATTTATTAATAATATAG
TTATCTAAATTCTTTCACAATTTTACCTCACTTTTTTTATTTCTCCTGATAATAACTCTTAATCTTTATATATTCTATTCAACGTCGTATTTTATTTAAC
AAAGCCATATCGTACTTTAGTAATTATATATTCTTTTTTTATATATGTTAAGTATTTATCAAAGTTATATAAAAACTTTCCTAAAATTTTAATTTCTTTA
TTTATAGATCTTCTATAATTTATATAATTCCATTTAATATTTATATTCTTATAAAAACATACATAGATCCTCAAAATGTATTTTCTTTCTTTATCTATTT
TTGTACTATCTATTAATCTCATTTTTCTACCTCATTAATAATTTTACATTTACTTACTCCTATATTATTTATAAACATAATCAACTAAATTCTTACCACA
ATACCTTTTACTTTATTAGCATTTATCTACACAATTTTCATACAACATTACTTTCATCCTTTAAGACAATTCTATCTTTATTTTTTATCATTTTTTATAT
TTACAACTAACATTAATATATTCATCTTTATTTATCATATTTTAATA
>LE_HBa0163D24_SP6_300970 (trimmed for quality and cloning vector)
ATGCCTCTGGGGCTTG

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.490052
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0163D24
Clone
Clone name
hba-163d24
LE_HBa0163D24
P163D24
Clone type
BAC
Contamination
none
Estimated length
88,111
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found