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Clone Read LE_HBa0163D24_T7_123350

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0163D24_T7_123350
Primer
T7
ID from Seq. Facility
LE_HBa_163_D24-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
738 trimmed for vector and quality, 863 raw
Sequence
>LE_HBa0163D24_T7_123350 (raw untrimmed)
CCCAGCTGGTCCCGGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTCCAAAGAGTTCCAGAATTCCCCATGAGAAGTTTCAGATACAAAGCC
GATATGGAAAAGACCCATACACAAAGGAGGGCTGTTGAAGAAACAAATAGAAAGAAGCACCGATAGTTCTGTTGTGCACCAACAAAGAAGAAGAGAAAAA
ATTAAAGTGTCTCAATAGGATATCTAAAGAGCATTTTAAATAGAAGAAGAGCTTCTCCTCCTAAAATTGATATTAACTTTTTTCCAATATCAACATTTTG
GAGTCAGGATACAGTTGGCACATTTCATCTTTAAATGAATCAAATAAATTAGGAAGCGTAAGAAAAGCAACAAATAGAAAATCATCCATGGAACTTAAAG
AAAAAGAAATAGTAATGAAAAAATGGATGTACTTACCTTCCCAATGCATTGACCCACCCAAGGGCAATGATGATCAAATCGCTCCACACAATTATCACAT
ACCGAACAATGAGATCATCTTGGTGGATGGTACAACATGCACGTTTCACAATATTTAACTCGTATAGGCAAACCATTCACAAGGACTTCATTGAAGCGAG
GCAGTCTACTGCTAGTTTCAACGCAAGCTGAGGAATCATACCCTCGAACTTCCTCTGGAGGATGATAATAACAATGTCAGGATCCTTTGCTGATGTTGAA
AGTAGAAGTATTAAAGACCCTATGGCAACCAATTACCCATTTAGGAAATTGAAATAATAAGAAACACCGGAAAGAGCATTAATGATGAATATAGGATTCC
AACTGGTGTAACCTACTGGCCCCCCAATATAATAATGTGGCTCTCCAGATTAGCCCTACCTTN
>LE_HBa0163D24_T7_123350 (trimmed for quality and cloning vector)
AGCTTTCCAAAGAGTTCCAGAATTCCCCATGAGAAGTTTCAGATACAAAGCCGATATGGAAAAGACCCATACACAAAGGAGGGCTGTTGAAGAAACAAAT
AGAAAGAAGCACCGATAGTTCTGTTGTGCACCAACAAAGAAGAAGAGAAAAAATTAAAGTGTCTCAATAGGATATCTAAAGAGCATTTTAAATAGAAGAA
GAGCTTCTCCTCCTAAAATTGATATTAACTTTTTTCCAATATCAACATTTTGGAGTCAGGATACAGTTGGCACATTTCATCTTTAAATGAATCAAATAAA
TTAGGAAGCGTAAGAAAAGCAACAAATAGAAAATCATCCATGGAACTTAAAGAAAAAGAAATAGTAATGAAAAAATGGATGTACTTACCTTCCCAATGCA
TTGACCCACCCAAGGGCAATGATGATCAAATCGCTCCACACAATTATCACATACCGAACAATGAGATCATCTTGGTGGATGGTACAACATGCACGTTTCA
CAATATTTAACTCGTATAGGCAAACCATTCACAAGGACTTCATTGAAGCGAGGCAGTCTACTGCTAGTTTCAACGCAAGCTGAGGAATCATACCCTCGAA
CTTCCTCTGGAGGATGATAATAACAATGTCAGGATCCTTTGCTGATGTTGAAAGTAGAAGTATTAAAGACCCTATGGCAACCAATTACCCATTTAGGAAA
TTGAAATAATAAGAAACACCGGAAAGAGCATTAATGAT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.949217
Expected error %
1.3091
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g24630.1 Score 119 E Value 1e-28 Identity 66.70% Align. Length 292bp (39.57%) Frame 3
68417.m03527 zinc finger (DHHC type) family protein contains Pfam profile PF01529: DHHC zinc finger domain
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g26935.1 Score 113 E Value 2e-26 Identity 65.30% Align. Length 283bp (38.35%) Frame 3
68416.m03371 zinc finger (DHHC type) family protein contains Pfam profile PF01529: DHHC zinc finger domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAD81998.1| Score 126 E Value 7e-28 Identity 22.80% Align. Length 227bp (30.76%) Frame 3
putative NEW1 domain containing protein isoform [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB79373.1| Score 119 E Value 6e-27 Identity 66.70% Align. Length 292bp (39.57%) Frame 3
putative protein [Arabidopsis thaliana] emb|CAA23000.1| putative protein [Arabidopsis thaliana] ref|NP_194194.1| zinc finger (DHHC type) family protein [Arabidopsis thaliana] pir||T05571 hypothetical protein F22K18.170 - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0163D24
Clone
Clone name
hba-163d24
LE_HBa0163D24
P163D24
Clone type
BAC
Contamination
none
Estimated length
88,111
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found