Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0116H08_SP6_300264

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0116H08_SP6_300264
Primer
SP6
ID from Seq. Facility
LE_HBa_116_H08-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1566 raw
Sequence
>LE_HBa0116H08_SP6_300264 (raw untrimmed)
TTGCACACTCGACAAACAATAGACACAATTGATATACGACAACACCATAATTATTATTGCGCGACAGATTCCATAACACCATCTTACCTTTTAAAATANT
TCATACACCTCTTGCATACATACCATTCTCTTCATCTTCCTATACTCATCCATGTGCGCACCTCTCTTCTCTCTCATCATTCTCACACCACACTCTCCAC
AGCGGACGACTAATCGCAACCTCTTCCAATTCACATAATCCTTATTTCTTTTCGTACATCAATCTATTGATTTACTCCATTCAATATCCACTAAAATTAC
CAATTCTCCCATCATCTAACCCATTTCTCTCCACTTCANTATCACTACCTTCTCTATGATATCTGTAACCGAATATACACATACTTACTCTACACTCTAC
TACTATACCTCTTACATCTCTCTGTACCTCCTCTCGTTCACTCTAACACAATATCCAACACAACCTAGTACATTGTCATACCTCTCATACTGCACCTTCC
TTGCAACACACCTCTATCTACTAATCACAATCATCACTATGCTATTTCACACATTTTCCTCCTCTTCTTCTATTAACCATCTCACCATCTAACTACTCCA
TACATCCTTCACAATCTCGAACTCCCTCACGTTCTATTATCCATTCGCAACTATGTGCACTTTATAACATACTTAAACACGCTGAAAACACGCAAAATAC
GATCGACTAATAATCTCGAAACGCAAANATCACTCCGCGTTGCCTTCCTCCAAATACCTCCACCATCTGACACTCTTATATCATACCAACTCCACATTTG
ATTCATTCGTCTGTCCATAAACTCTACTCATAAATCAATACTGACTTCATACATCATATTCGCACCACAATACACTCAATTAACTTTATCCTCTCCACTT
CCCACAAACACTCCCTTACTTTCATCCTCTCATATCCATTTCTCATCCCCCCATCAATATATATATTTCTTCTATATCCTCTACACAAATCTCTTCTCCT
CTATACTCTATTCTCTAACCTCCTATCTCTTCTCTCTTCCACTTACATCTCCATACTCAAATCTCTCTTCCTGCCACTCAACCTCTTCCAACTCATCGCC
CCACAACCCCTACCCAACTATACTTACTCATCCATTTCTTACTTACTACCCATTACACTTCCTCATCCTTCTTCTCACCTCCCTTCTCCTTCATTCAATT
TCCTTCTCCATTTCACCTTCATTTCTCTTCTACACCTCTATCCTCTCTTATCTACTTATCATCACTCTCCATTACCCACCATTCATCAACCTCCTTAACA
TCACCTTTCCCTACTTTCTCTCCTTCCTTCCTCCTTCTTAACTCACTTCTCTCTCCCCTTCTTACCATTCACCTTCATCTCTTCCATTACTTTCCCTTCA
CTTATTACTATTCTCACCCTCTCACTCTATCCTCTACTCCTTCTCACCTCTACCATTCTTTCTTTATCTCCCTATATACATATATACTCATCTCTTTCTC
TCCTTACCACCCCTTCATCCTTCCTTCCCTCCATTCAACCTCACTCTCCTTACCCTCCTTATCTAC
>LE_HBa0116H08_SP6_300264 (trimmed for quality and cloning vector)
CT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • High predicted error rate
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
6.61011
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0116H08
Clone
Clone name
hba-116h8
LE_HBa0116H08
P116H08
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found