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Clone Read LE_HBa0092N09_T7_27137

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0092N09_T7_27137
Primer
T7
ID from Seq. Facility
LE_HBa_092_N09-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
705 trimmed for vector and quality, 881 raw
Sequence
>LE_HBa0092N09_T7_27137 (raw untrimmed)
AGTGAACTCGGGCCCGGGGGGACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTGGCCAAATCCACTCTACCACCATAATCCTCACATAGCATTTCCAA
CAACTTCACATCCATTCGGGAAAAAAAAAACAAATTTTAATATCGTTAATATATACTGACAATATAAAAACTTTAATAAAAGATAGAGTAATCACGTGAA
TGACGTCGACTTTGACTCCATCTATTCCAACAGATTCCAGGTGAGAGTGTAGGCCCTCATACAATTTTTCAGCAATTTCTGGTGGGACCAACCCAATTCC
ATTGTTCACAATTTTATCAACTGCCAAATCTTCCATTGTTTTTTCTAATCCAGGGGTTAATTTGGGTCTAATAACTTTGGATTCGGGTAGACCCGATACC
CCGGGTCTTAACCCGCCCCAGTACCCACATAAAGCATGCCACACGTACACAAAGTCCACTGTATTGAACTCCTCTTTAAGGTCCTTAATAAAAGCACCCA
TGCCCTTATTGTTAGGGTCATCATGCCCCAAACTTCTACGACTTGCATAATCTCTAAATTTATAATTTTCCTCGAATTTGATAAGCCTACACGGCATTTG
CTCACCGGCAGAGGTTCTATTTGTACCTGTTCAGACATAATATAATTAAAAAAAATAATCCCTAACGACTTTTTAGATAATTCAATCAAACAATTATACA
TCGATCGATCATACCCTTCTGAATTGATTGGGTCATCGTCTTGACAAATGGATTGCCAACCCTCCTCCTTCCACACGAAGCCTGGTGGGACATCCCCATC
TGCTGGCCTTTCCCGGCTTCCCCACACTTGAGGGTGTACTTATGGGATATGCTTCCTGGCTGCCAGCCAAATGGTCTGCAT
>LE_HBa0092N09_T7_27137 (trimmed for quality and cloning vector)
AGCTTTGGCCAAATCCACTCTACCACCATAATCCTCACATAGCATTTCCAACAACTTCACATCCATTCGGGAAAAAAAAAACAAATTTTAATATCGTTAA
TATATACTGACAATATAAAAACTTTAATAAAAGATAGAGTAATCACGTGAATGACGTCGACTTTGACTCCATCTATTCCAACAGATTCCAGGTGAGAGTG
TAGGCCCTCATACAATTTTTCAGCAATTTCTGGTGGGACCAACCCAATTCCATTGTTCACAATTTTATCAACTGCCAAATCTTCCATTGTTTTTTCTAAT
CCAGGGGTTAATTTGGGTCTAATAACTTTGGATTCGGGTAGACCCGATACCCCGGGTCTTAACCCGCCCCAGTACCCACATAAAGCATGCCACACGTACA
CAAAGTCCACTGTATTGAACTCCTCTTTAAGGTCCTTAATAAAAGCACCCATGCCCTTATTGTTAGGGTCATCATGCCCCAAACTTCTACGACTTGCATA
ATCTCTAAATTTATAATTTTCCTCGAATTTGATAAGCCTACACGGCATTTGCTCACCGGCAGAGGTTCTATTTGTACCTGTTCAGACATAATATAATTAA
AAAAAATAATCCCTAACGACTTTTTAGATAATTCAATCAAACAATTATACATCGATCGATCATACCCTTCTGAATTGATTGGGTCATCGTCTTGACAAAT
GGATT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.960476
Expected error %
1.45357
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g40390.1 Score 210 E Value 2e-59 Identity 64.20% Align. Length 577bp (81.84%) Frame 2
68418.m04899 raffinose synthase family protein similar to galactinol-raffinose galactosyltransferase [Vigna angularis] GI:6634701, seed imbibition protein GB:AAA32975 GI:167100 from [Hordeum vulgare]; contains Pfam profile PF05691: Raffinose synthase or seed imbibition protein Sip1
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g01970.1 Score 139 E Value 6e-36 Identity 49.30% Align. Length 571bp (80.99%) Frame 2
68417.m00262 galactinol-raffinose galactosyltransferase, putative similar to galactinol-raffinose galactosyltransferase GI:6634701 from [Vigna angularis]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAD20127.2| Score 218 E Value 4e-59 Identity 66.90% Align. Length 577bp (81.84%) Frame 2
raffinose synthase [Pisum sativum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAD02832.1| Score 214 E Value 2e-60 Identity 68.20% Align. Length 577bp (81.84%) Frame 2
raffinose synthase [Cucumis sativus]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0092N09
Clone
Clone name
hba-92n9
LE_HBa0092N09
C02HBa0092N09
P092N09
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found