Clone Read LE_HBa0092F05_T7_26745

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0092F05_T7_26745
Primer
T7
ID from Seq. Facility
LE_HBa_092_F05-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
755 trimmed for vector and quality, 900 raw
Sequence
>LE_HBa0092F05_T7_26745 (raw untrimmed)
GTGTGGTTGTGTCCCGGGGGATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTAGGCATCGACATCTTGTTTCACTCATTGGTTATTGTGATGAACAATC
AGAAATGATTCTAGTCTATGAGTACATGTCTAATGGTCCTTTGCGTGACCATATTTATGGTTCCAGTTTGCCAACTCTGACATGGAAACAAAGGCTTGAA
ATCTGCATAGGAGCTGCTCGAGGACTGCACTACCTTCACACTGGTTCAACTCAGGGAATAATACATCGCGATATAAAAACTACAAACATCCTCCTTGATG
AGGACTTTGTGGCAAAGATGGCTGATTTTGGCTTGTCAAAAACCGGTCCTTCACTGGAGCAAACACATGTTAGCACAGCAGTGAAGGGTAGTTTTGGTTA
CCTTGATCCAGAGTACTTCAGAAGACAACAACTAACAGAAAAATCTGATGTGTACTCGTTTGGGGTAGTCCTTTTTGAGGTACTATGTGCAAGGCCTGCA
CTTGATCCTGCGTTGCCAAGAGAACAAGTGAATTTAGCAGAATGGGCAATGCAGCAACACAAAAAGGGCTCTCTGGAGAAGATCATAGACCCTCATCTTG
CAGGAACCATCAGCCCTGAGGCGTTAAGGAAATACGTGGAAGCTGCAGAGAAATGCTTGGCAGAATATGGGGTTGATAGGCCTACAATGGGAGATGTTTT
GTGGAACTTAGAATATGCCTTGCAGCTTGAAAGTGCAACACCGAGTAGTGTTCCAGTGAAGAATGAAAATGAGAATGAAAATTTCCAGCCAAGTTCTTCA
AAACACCCTGGAACGAATTCGAAAGGCCATAAAGAAGCTCAGCTCATTGAACTTAATTGACGATTCTGGAGTGCGTGTTGGCTTCCCCTATGTTCTTAGA
>LE_HBa0092F05_T7_26745 (trimmed for quality and cloning vector)
AGCTTAGGCATCGACATCTTGTTTCACTCATTGGTTATTGTGATGAACAATCAGAAATGATTCTAGTCTATGAGTACATGTCTAATGGTCCTTTGCGTGA
CCATATTTATGGTTCCAGTTTGCCAACTCTGACATGGAAACAAAGGCTTGAAATCTGCATAGGAGCTGCTCGAGGACTGCACTACCTTCACACTGGTTCA
ACTCAGGGAATAATACATCGCGATATAAAAACTACAAACATCCTCCTTGATGAGGACTTTGTGGCAAAGATGGCTGATTTTGGCTTGTCAAAAACCGGTC
CTTCACTGGAGCAAACACATGTTAGCACAGCAGTGAAGGGTAGTTTTGGTTACCTTGATCCAGAGTACTTCAGAAGACAACAACTAACAGAAAAATCTGA
TGTGTACTCGTTTGGGGTAGTCCTTTTTGAGGTACTATGTGCAAGGCCTGCACTTGATCCTGCGTTGCCAAGAGAACAAGTGAATTTAGCAGAATGGGCA
ATGCAGCAACACAAAAAGGGCTCTCTGGAGAAGATCATAGACCCTCATCTTGCAGGAACCATCAGCCCTGAGGCGTTAAGGAAATACGTGGAAGCTGCAG
AGAAATGCTTGGCAGAATATGGGGTTGATAGGCCTACAATGGGAGATGTTTTGTGGAACTTAGAATATGCCTTGCAGCTTGAAAGTGCAACACCGAGTAG
TGTTCCAGTGAAGAATGAAAATGAGAATGAAAATTTCCAGCCAAGTTCTTCAAAA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.976383
Expected error %
0.422805
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g54380.1 Score 395 E Value 1e-110 Identity 25.60% Align. Length 740bp (98.01%) Frame 1
68418.m06771 protein kinase family protein contains protein kinase domain, Pfam:PF00069
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g39110.1 Score 389 E Value 1e-108 Identity 26.90% Align. Length 713bp (94.44%) Frame 1
68417.m05538 protein kinase family protein contains protein kinase domain, Pfam:PF00069
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAL83882.1| Score 400 E Value 1e-110 Identity 25.70% Align. Length 746bp (98.81%) Frame 1
PTH-2 [Cucumis melo]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAA98098.1| Score 395 E Value 1e-109 Identity 25.60% Align. Length 740bp (98.01%) Frame 1
receptor-protein kinase-like protein [Arabidopsis thaliana] ref|NP_200249.1| protein kinase family protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0092F05
Clone
Clone name
hba-92f5
LE_HBa0092F05
P092F05
Clone type
BAC
Contamination
none
Estimated length
99,686
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found