Clone Read LE_HBa0168N23_SP6_263192

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0168N23_SP6_263192
Primer
SP6
ID from Seq. Facility
LE_HBa_168_N23-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
489 trimmed for vector and quality, 797 raw
Genbank Accession
DU084698
Sequence
>LE_HBa0168N23_SP6_263192 (raw untrimmed)
GCGCCTCACATGCTTATTCAATTAGGCCACTGTTCATCTCGTCACTCTTACTACTGGTTGTCTACCTATACATACCAACACTCGAGTTCCAATGCCAACA
CAAGTTTTAAAACTCCCCTCACCAGAGAGAAAATCATAAGAAATGACTGCTCTTTCTTCAAAACCTAATCACATTCGGTCAGTCAGTTTTCCTGGCAGAT
CACACCCAACCACCCAGAGAGTTGAAGTGGAGCTAAACAAGCTCAAATCTTTAGAAGTATCAGTTGCACCAGCAGCTGTGAGCAATGGTCTACTTGGTTT
GGAGAAATCATTCAAGTGCATTGATGATCTTTTCAACTTACCTCAAACCCTTCAAGCCCTCTCCCAGAATCTACATGCAAAATGGCTTGACGATTTATTG
GATAAATCAGTGAGGCTTCTTGACCTTTGTGGCACAATAAGAGAACTTGTCTCACAATGTAAAGAAAATGTAAGATATTCTTCAATCCTCTCTCAGAAGG
AGAAAAGGAGATTCAACTACTGATGACAGCATTGAAAGATTTACCTCTTTCATCAAGAAGATCCAGAGGGATGCCCAAAGATAAGTCTCCACTTTTGAAC
CAAAGGGATTCGAGTGACTTGCAGTATCGGTCTTTGCTAAGATGCATAATTCATGAAGCTTTTACCTGCGAATAAAAACAATTAAAGTAAGCCTTATGCA
ACCTTGCCCTTTCAATCTTTTCCAAAAGCTCCTTGCCCTCTCTTTTGGTGTGCCCATTTTTTGAAAGCCTAATTCTATTCTAAATTGGTTTTCTCTG
>LE_HBa0168N23_SP6_263192 (trimmed for quality and cloning vector)
AATTAGGCCACTGTTCATCTCGTCACTCTTACTACTGGTTGTCTACCTATACATACCAACACTCGAGTTCCAATGCCAACACAAGTTTTAAAACTCCCCT
CACCAGAGAGAAAATCATAAGAAATGACTGCTCTTTCTTCAAAACCTAATCACATTCGGTCAGTCAGTTTTCCTGGCAGATCACACCCAACCACCCAGAG
AGTTGAAGTGGAGCTAAACAAGCTCAAATCTTTAGAAGTATCAGTTGCACCAGCAGCTGTGAGCAATGGTCTACTTGGTTTGGAGAAATCATTCAAGTGC
ATTGATGATCTTTTCAACTTACCTCAAACCCTTCAAGCCCTCTCCCAGAATCTACATGCAAAATGGCTTGACGATTTATTGGATAAATCAGTGAGGCTTC
TTGACCTTTGTGGCACAATAAGAGAACTTGTCTCACAATGTAAAGAAAATGTAAGATATTCTTCAATCCTCTCTCAGAAGGAGAAAAGG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.959997
Expected error %
0.529209
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g35690.1 Score 79 E Value 2e-15 Identity 11.70% Align. Length 308bp (62.99%) Frame 2
68417.m05066 hypothetical protein contains Pfam profile PF03087: Arabidopsis protein of unknown function
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g17080.1 Score 75 E Value 2e-14 Identity 13.30% Align. Length 329bp (67.28%) Frame 2
68415.m01972 hypothetical protein contains Pfam profile PF03087: Arabidopsis protein of unknown function
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAK01735.1| Score 91 E Value 2e-17 Identity 16.30% Align. Length 299bp (61.15%) Frame 2
hypothetical protein [Glycine max]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB80285.1| Score 79 E Value 6e-14 Identity 11.70% Align. Length 308bp (62.99%) Frame 2
putative protein [Arabidopsis thaliana] emb|CAA20039.1| putative protein [Arabidopsis thaliana] gb|AAX23906.1| hypothetical protein At4g35690 [Arabidopsis thaliana] ref|NP_195294.1| hypothetical protein [Arabidopsis thaliana] pir||T04674 hypothetical protein F8D20.200 - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0168N23
Clone
Clone name
hba-168n23
LE_HBa0168N23
C02HBa0168N23
P168N23
Clone type
BAC
Contamination
none
Estimated length
112,452
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found