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Clone Read LE_HBa0165P13_SP6_262898

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0165P13_SP6_262898
Primer
SP6
ID from Seq. Facility
LE_HBa_165_P13-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
3 trimmed for vector and quality, 1535 raw
Sequence
>LE_HBa0165P13_SP6_262898 (raw untrimmed)
NGGAGGTCTATTCTNNNNNNNNANNNNNNGTGATACANAAAAAGGNAAANAAAAAAAAAAANAAAATATTAAAAGAGAAAGAGAGAAGGGAGAGAACCCC
CCTTTTTAAGAAAGGGATGGGTGNGAGTATAGTAAAAAGAAAATTTTTAAAAAGTGTATGCCCTCCCTTTGAGAAGAGGAGAGGTAAAATTATGAATATA
GTAATTAGTACAATATATAATGAAGTGAGAGATATCAAGTCTTGGGATAACTAGTGAACGAAATACGAACACAACTATTCTATCCTCGTCGAGCATAGAT
ATCTTATCGTATATTAGATGTTGGGTACGGTCATTTGAGTAAGTTAATAATCGTGCAAATGTGAGAGAAGGAAGAAATGTAATATATAAAATGCTATACG
ATGTTAATGCTCACATAACAATCAAAATGACAAATGAATTCAAATATGCATCAAGCTAATTAGTCGACTAGCGACTAATGATCACAATTGCTATTGTATA
AGTCAATAGAATTATTCATTGTAGAGTAGGTCCATAAATTAAATGACTGTCAATAAAATCGTACATGACTATAGCCTTACGCATGTTCATACTATATATG
ATGTACACTCAATGATGTAACTTCTGAATTCATCAAAGATACTGTACCTGCACTAACTATTATACGTGTATTATATGAATGCGATAATAACCACTTTGAC
ATAAGATATCACATTACATATAACATATATGTTCAACAGCAAGTTGTTATACAGATATCAACAGTACCATACAGTAACTATTAACTTCTCAATAATTAAT
AATCTTATTTAATATGAGATGATAATATACGTACAATGAATTATGAGTACTAATAGAAATATTATGACAAATACTAATAATGCATCACATAGGACTATAA
CATCCTCATCACTTACAGTGATATCACAGGACTAATAGCTTTAATATGTTACGCCAATATTGATACGTAATAAGTGATGTACCTTCATGTAATGGAGTAG
ATATGACATTGTAAAACCAGCCTTCTGAATAAACAAGAGATCATGATATACATATGTATCAGTGGCCAAATAATACTTCATATATCTCATCTACTCGATG
ATTGTCTCAAACTAATAATATATAGTTATACAGCTGTTATTTAGACGTCGATATATGGACTTCTATACTTTTTTGATGTGTTTCATGTAATAATTATCTA
CGTACGAACTGTAGAGCACAGACTATTCTATGCGATATCAGTAATCAGTCTATAAATTGAATCAAATTAATTAAGTCAATACGTAGATGATAGCATATAT
GGACGATAAACAATTAGACCGTGCTGGAATACGGAATGCGTATATTTTATTTACCATCAACATATACACACGACTGTTTTCATTTAGTACAATACTCTAC
TTAGCTAAACCATCAACTTACTCTCGAATAATATAGTCTCTATATCAACAATTCTATACATAATATATAGAGATAGCTACATCTATACGTAATTACATAA
ACTCTTACTAACATCTAGATAATCTGCTCTACGAC
>LE_HBa0165P13_SP6_262898 (trimmed for quality and cloning vector)
AGA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.753972
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0165P13
Clone
Clone name
hba-165p13
LE_HBa0165P13
P165P13
Clone type
BAC
Contamination
none
Estimated length
77,835
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found