Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0196C10_T7_258515

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0196C10_T7_258515
Primer
T7
ID from Seq. Facility
LE_HBa_196_C10-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
413 trimmed for vector and quality, 983 raw
Genbank Accession
DU083718
Sequence
>LE_HBa0196C10_T7_258515 (raw untrimmed)
ACGTACGGGATCTCTGAGTCGACTGCAGGCATGCAAGCTTGCATGTCCAATCATATGTAAAGATCTTTGAATTCTACATAGGATTCCTGGCACCAGTAGG
CAAAGTCTTTTCCCAACCCGAACTAGTCTACAATATCCTCTACGGGAGGCTTATTAGGGATGAAGATGTCTTCTTGTTTTCTCGCTCTCCTTTCTATCCC
AGTTTCTACCGTGTCTATACGATCTCTGATATCCTCCAAAGTTGGGTTAATTTCTGCGGTTCTGAATCGAAACACTATCTTTTGGCTATCCAAATATCCC
GTAAGGACCTCAACCAATTATGGTCAACCGTTCATGTTAATCAATTTATGTTAATGCACCCACGTATTTGTTGACGGTTCTTCTATGATCTCCGTCGATA
ACACATTGTGAGTTGAGGTGGTGTTGCTATGACCATATCTACCAAATAGAAGTCTAGTTAGGTTTTCCCCAACACCAATTGATTTTCACACATACCTCAT
TCAAATGTCCCATTCAATTATCCTTCGTGAGGCCGAACACCCTTAATACCCAGTTTTGGTGCTTTTACTCCTACATGCCCCTAATACTCCCTTGGCTTCT
TAGTCCCTTCTTAAGGCCTATTCTTTAAACTTTGGATTTGAGTTCCCTCCCTCCTTAGGATCACTCAAACACCCCTTCAAGTCCCATGGCTCCCTCCATT
CAAATAAACTACACTTTTTATTCTCCCCTCCATCGTCCTCTATACCACCCTATAATTCTTTCGGCCTGATATCCGACACTTATTCCTTCCTTTACTCTAC
ATACACGGCCTGTCTCCCTCCCCTCTCCTTTGTTCTCGCCTCGCCTAAGTCCATTCTCCTTACTATGTTCACAGTAACCTTATACTCTTCTCTTTCTTCC
TCACTCTTGCTCCCCCTAATCATTTTTATTTCCGCTCTTTACCCCCACATACATTTATCACTATCGCCCAATCGTTTCTATCC
>LE_HBa0196C10_T7_258515 (trimmed for quality and cloning vector)
CAGGCATGCAAGCTTGCATGTCCAATCATATGTAAAGATCTTTGAATTCTACATAGGATTCCTGGCACCAGTAGGCAAAGTCTTTTCCCAACCCGAACTA
GTCTACAATATCCTCTACGGGAGGCTTATTAGGGATGAAGATGTCTTCTTGTTTTCTCGCTCTCCTTTCTATCCCAGTTTCTACCGTGTCTATACGATCT
CTGATATCCTCCAAAGTTGGGTTAATTTCTGCGGTTCTGAATCGAAACACTATCTTTTGGCTATCCAAATATCCCGTAAGGACCTCAACCAATTATGGTC
AACCGTTCATGTTAATCAATTTATGTTAATGCACCCACGTATTTGTTGACGGTTCTTCTATGATCTCCGTCGATAACACATTGTGAGTTGAGGTGGTGTT
GCTATGACCATAT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.977401
Expected error %
0.670987
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU89785.1| Score 127 E Value 2e-30 Identity 63.30% Align. Length 333bp (80.63%) Frame 3
late blight resistance protein-like [Solanum tuberosum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU89786.1| Score 123 E Value 2e-27 Identity 20.60% Align. Length 281bp (68.04%) Frame 3
hypothetical protein [Solanum tuberosum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0196C10
Clone
Clone name
hba-196c10
LE_HBa0196C10
P196C10
Clone type
BAC
Contamination
none
Estimated length
115,661
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found