Clone Read LE_HBa0165J09_T7_255822

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0165J09_T7_255822
Primer
T7
ID from Seq. Facility
LE_HBa_165_J09-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
566 trimmed for vector and quality, 982 raw
Sequence
>LE_HBa0165J09_T7_255822 (raw untrimmed)
TGGTCGGGGATCTCTAGAGTCACCTGCAGGCATGCAAGCTTGGCGTATTCCTCCACCAAATTTGTAGTTTTAACGACCAAAAAGTGCACAAACTTAGTAA
CTCTATCAACTATAACCCAAATGGAGTCATGCTGTCTGTGAGTATGAGGTAAGCCTGTAATGAAGTCCGTATTGATCACTTCTTACTTCCAAGTACGAAT
GTTGATCTCTTGAGGCATACCTCCTGGTTTCTGATGTTCAAACTTCACTTTCTGGCAATTAGGGCACTTACCCACAAAATCCGCTTTATATTTTTCCATA
CCATTCCACCACAAGACTTTCCGCAGGTCACAATAAATCTTAGTGGCACCTGAATAAAAAGAATATCTGGAATTATGAACTTCTGCAAGAATCTACTATC
TCAACTCACCCACCTTAGGAACACATAATCTACCCTTATAGCGAATCACACTATTTCTCCCTTGGAAAAGAACTCAACTCTCTGCTGATGCACTATACCC
TTTAGTTGAAGTAATATCATATCACTGTCTTTATTTTCCTTAACCTCCGCTTCTAATGAAGATTCTAACCCTTTCTGAAATGCTACTCCTCCATTTGATA
TGCTTATAAGGATGAACCTCTAAGTGAGCAACTCTATTGAACTACTTTGGCTAGTTTCGTTCTTTCTTTCATAACTTGTGCTACATTACCCCCTAATTAT
CTTGGTAATACTCTTTGTCTACCTTTTTGTCATTTCCCAAGACTGTAAAGTCTCCCTCATTTTACTAAACCTTGAAAATTCCTCAGTCCCTCTTTTTTGT
AAATTAAGTCTAATTTTTTTTCAAGTGATATATTTTCTTAAGTGTTAATTCATGTATTCTGTACTATTTTTTTCCTTGCTCACCTTTTATCTTAGATTAT
CTCTTCTATATTCTTCTGTGCTTGCACTCTCACTTTTCTAACTATTCTCATCTTATTGAGAATTATCCTCATTCATATTTAC
>LE_HBa0165J09_T7_255822 (trimmed for quality and cloning vector)
AGCTTGGCGTATTCCTCCACCAAATTTGTAGTTTTAACGACCAAAAAGTGCACAAACTTAGTAACTCTATCAACTATAACCCAAATGGAGTCATGCTGTC
TGTGAGTATGAGGTAAGCCTGTAATGAAGTCCGTATTGATCACTTCTTACTTCCAAGTACGAATGTTGATCTCTTGAGGCATACCTCCTGGTTTCTGATG
TTCAAACTTCACTTTCTGGCAATTAGGGCACTTACCCACAAAATCCGCTTTATATTTTTCCATACCATTCCACCACAAGACTTTCCGCAGGTCACAATAA
ATCTTAGTGGCACCTGAATAAAAAGAATATCTGGAATTATGAACTTCTGCAAGAATCTACTATCTCAACTCACCCACCTTAGGAACACATAATCTACCCT
TATAGCGAATCACACTATTTCTCCCTTGGAAAAGAACTCAACTCTCTGCTGATGCACTATACCCTTTAGTTGAAGTAATATCATATCACTGTCTTTATTT
TCCTTAACCTCCGCTTCTAATGAAGATTCTAACCCTTTCTGAAATGCTACTCCTCCATTTGATATG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.943835
Expected error %
0.438626
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38792.1| Score 194 E Value 2e-55 Identity 63.40% Align. Length 559bp (98.76%) Frame 1
putative gag-pol polyprotein [Solanum demissum] gb|AAT38791.1| putative gag-pol polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38790.1| Score 194 E Value 2e-55 Identity 63.40% Align. Length 559bp (98.76%) Frame 1
putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0165J09
Clone
Clone name
hba-165j9
LE_HBa0165J09
P165J09
Clone type
BAC
Contamination
none
Estimated length
94,793
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found