Clone Read LE_HBa0080J18_T7_20819

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0080J18_T7_20819
Primer
T7
ID from Seq. Facility
LE_HBa_080_J18-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
770 trimmed for vector and quality, 846 raw
Genbank Accession
DU037808
Sequence
>LE_HBa0080J18_T7_20819 (raw untrimmed)
ACCTGGGACCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTATTTCATGCCATAATTTGTATCCTTAGATGTATGATTATATAAATGTCTG
TCGAAATTCAAATACTTTCTTATGATCAATTTCCTGAAAATACTCAAGGTTCTGCATTTATGCTTGGAAGAGCTTTGACATCTGTCTTATGGGGAACAGT
GGCTGATCGATATGGACGAAAACCAGTTATAGTTTTTGGCACTTTTGTAGTGTACGTTAATCTTTATTCAAATGTTCTCTTTAAGACTAAACTTAAATAT
CAACAAGTTTATACTTTTTGCTTTAATTGTGCTTCAGGGTTATTTTCAATACTCTCTTTGGTCTTAGTGTTAACTTTTGGATGGCAGTTATTACACGATT
TCTTCTCGGTTTCTTAAATGGTTTGATGGGACCAATAAGGGTATGCTATCGGTTTAATTCTATCTTACGATTCAGAACTGCATCCTCTGCTATTTATTAA
GATACTTACCTTCCATTCTTAGGCATATGCTGCAGAAATTTTTCGTGAAGAGTATCAAGCAATGGGAATGTCAACGGTAATATGCTCTTAGTTTTCAGTT
TTGCAAATGATTTCTAACAAATGAGAGTATTGCAACAATTTCAGAGTGACAAAAGAAATGGCAAGAATGCATTTTTGTATGACCATTTGGACAGTGGATT
TTAGAGAAGTTTTATTTTATTTGTATTGTTTCAGATTAGTAGTGCCTGGGGTATTGGATTGATTATTGGCCCAGCTATAAGAAGCTTCTTTGCTCAGGTA
TTTTCTTTTACTTTTTGAAATCCTTTTTCTGAGGTATAAAATCTGA
>LE_HBa0080J18_T7_20819 (trimmed for quality and cloning vector)
AGCTTATTTCATGCCATAATTTGTATCCTTAGATGTATGATTATATAAATGTCTGTCGAAATTCAAATACTTTCTTATGATCAATTTCCTGAAAATACTC
AAGGTTCTGCATTTATGCTTGGAAGAGCTTTGACATCTGTCTTATGGGGAACAGTGGCTGATCGATATGGACGAAAACCAGTTATAGTTTTTGGCACTTT
TGTAGTGTACGTTAATCTTTATTCAAATGTTCTCTTTAAGACTAAACTTAAATATCAACAAGTTTATACTTTTTGCTTTAATTGTGCTTCAGGGTTATTT
TCAATACTCTCTTTGGTCTTAGTGTTAACTTTTGGATGGCAGTTATTACACGATTTCTTCTCGGTTTCTTAAATGGTTTGATGGGACCAATAAGGGTATG
CTATCGGTTTAATTCTATCTTACGATTCAGAACTGCATCCTCTGCTATTTATTAAGATACTTACCTTCCATTCTTAGGCATATGCTGCAGAAATTTTTCG
TGAAGAGTATCAAGCAATGGGAATGTCAACGGTAATATGCTCTTAGTTTTCAGTTTTGCAAATGATTTCTAACAAATGAGAGTATTGCAACAATTTCAGA
GTGACAAAAGAAATGGCAAGAATGCATTTTTGTATGACCATTTGGACAGTGGATTTTAGAGAAGTTTTATTTTATTTGTATTGTTTCAGATTAGTAGTGC
CTGGGGTATTGGATTGATTATTGGCCCAGCTATAAGAAGCTTCTTTGCTCAGGTATTTTCTTTTACTTTT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.939099
Expected error %
1.23808
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g43790.3 Score 65 E Value 3e-11 Identity 16.90% Align. Length 194bp (25.19%) Frame 2
68416.m04680 transporter-related low similarity to SP|P39843 Multidrug resistance protein 2 (Multidrug-efflux transporter 2) {Bacillus subtilis}; contains Pfam profile PF00083: major facilitator superfamily protein
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g43790.2 Score 65 E Value 3e-11 Identity 16.90% Align. Length 194bp (25.19%) Frame 2
68416.m04679 transporter-related low similarity to SP|P39843 Multidrug resistance protein 2 (Multidrug-efflux transporter 2) {Bacillus subtilis}; contains Pfam profile PF00083: major facilitator superfamily protein
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0080J18
Clone
Clone name
hba-80j18
LE_HBa0080J18
P080J18
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found