Clone hba-80j18
 Clone and library
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Clone and library
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| Physical mapping
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| Fingerprint Contig Builds (FPC) |
- not present in Tomato FPC (AGI 2005)
| Marker matches - overgo what's this? |
| Marker matches - BLAST |
| Marker | Evalue | Identity % | Score | Params |
|---|---|---|---|---|
| cLPT-1-K7 | 4e-55 | 0.991 | 210.00 | evalue cutoff: 1e-10; min len = 25; min identity=0.96 |
| Marker matches - manual |
| Physical map (from marker matches) |
| FISH map |
| FISH images |
| SC Spread ID | Images | Distance from centromere (percentage of arm length) | ||
|---|---|---|---|---|
| 700-02 1 | Composite | Fluorescence | Phase | 60.3% |
| 700-10 1 | Composite | Fluorescence | Phase | 59.7% |
| 700-13 1 | Composite | Fluorescence | Phase | 61.4% |
| 700-17 1 | Composite | Fluorescence | Phase | 59.6% |
| 700-24 1 | Composite | Fluorescence | Phase | 60.4% |
| 700-25 1 | Composite | Fluorescence | Phase | 58.9% |
| 700-27 1 | Composite | Fluorescence | Phase | 59.0% |
| 700-35 1 | Composite | Fluorescence | Phase | 59.4% |
| 700-36 1 | Composite | Fluorescence | Phase | 61.4% |
| 700-37 1 | Composite | Fluorescence | Phase | 60.7% |
| 700-39 1 | Composite | Fluorescence | Phase | 59.4% |
| 700-42 1 | Composite | Fluorescence | Phase | 57.9% |
| Mean±sd | 59.8%±1.0% | |||
Given an estimated length of 20.1µm for chromosome 1Q and the mean percentage above, this BAC is approximately 12.0µm±0.2µm from the chromosome centromere.
1Experiment conducted in the lab of Stephen Stack at Colorado State University.
| IL Mapping |
| Sequencing
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This clone is not assigned to any sequencing project.
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Sequencing Project
none
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HTGS phase
none
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Sequencing Status
none
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Sequencing Organization
not recorded
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Full Sequence
Sequence not available.
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End Sequences
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Warnings
none
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FTP | |
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Chromosome Assembly
this clone is not part of a chromosome assembly
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| Annotations
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Browse
LE_HBa0080J18 has no browsable sequence annotations
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Download
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Working
