Clone Read LE_HBa0080C09_T7_20465

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0080C09_T7_20465
Primer
T7
ID from Seq. Facility
LE_HBa_080_C09-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
654 trimmed for vector and quality, 1016 raw
Sequence
>LE_HBa0080C09_T7_20465 (raw untrimmed)
TACGGGTACCGGGGGATCCTCTAGAGTCAACCTGCAGGCATGCAAGCTTAGGGACCTCTCAAAAATTAACCACCCATTTCACCTATGACCTAAATTATAC
CCGCGAATCCAAAGAGAACTCTATGAAATTCTAGATCGTGAGTATTCGAATCGTCGAATGGTTGACCAAACTTCAATCTAAAGCGCTAAATGTTCCAAAG
TTTTCATAGACTTAACGACCTCAAACTCTCCAAAATGGACTACCGAATATAGAAATCATACAACATCCCCAAGTGTCAAAACTTTTAGGGACTAGATGAA
ATGCGATAGGAATTTCCATTCCGACACTAGTAACCTTAGAAAAGACTCCCAAAAAGTCACTTTTCAAGCAATATTAGCGCTTTCAACGATCATAACACTT
ACCACAAATTCTCAAATTTTGTGACTCTTTAGTTCCAATATTCAATTCTTCAAACGTTCATACATAAAAGTACTAGTGAATCTGAATGTGGGCGTAGGTA
ATAATGGCTAAACTTCACTGATAAATTTTCTAAAAATCAACCGCACTGCGGTCTATTACAATTTAATCCTTCTTTGAGACTTCAGCGCATGAACTTGTTT
ATTACCAATGTATCCTAAGAGTCGTTTGATATGACCTTTTGTCACGAGTCCAATTTCACCAGAAGTCGGTTAAATTAGGGACACCCCTACATTTTCTTTA
TTGTGTAGCCTGAAAATGTCTCTATTTACATATGTCTATAAGGTCCAGTGTTATGGTTAATGGTAAACTTTATCGTGGATTGGCCCAAAGACCTTATTCA
AATTAAATCTCCGCTAACGGATCCTAGGTTACCAAGTGTGATGCAACCCATTTCTAGTAATAATTTCTAAACCTCGCTTGATCACACTCTTACTTTACTT
TGCATTTCTTCTTTGGTTTCTTTTTCTTACATCCTCATTGGGTTCACTATATATATATACCCCCCATNTCTCCTCCCCCTCCCCCTTTTTTTTTTTTTTT
TTTTGTTTTTTTTTTC
>LE_HBa0080C09_T7_20465 (trimmed for quality and cloning vector)
AGCTTAGGGACCTCTCAAAAATTAACCACCCATTTCACCTATGACCTAAATTATACCCGCGAATCCAAAGAGAACTCTATGAAATTCTAGATCGTGAGTA
TTCGAATCGTCGAATGGTTGACCAAACTTCAATCTAAAGCGCTAAATGTTCCAAAGTTTTCATAGACTTAACGACCTCAAACTCTCCAAAATGGACTACC
GAATATAGAAATCATACAACATCCCCAAGTGTCAAAACTTTTAGGGACTAGATGAAATGCGATAGGAATTTCCATTCCGACACTAGTAACCTTAGAAAAG
ACTCCCAAAAAGTCACTTTTCAAGCAATATTAGCGCTTTCAACGATCATAACACTTACCACAAATTCTCAAATTTTGTGACTCTTTAGTTCCAATATTCA
ATTCTTCAAACGTTCATACATAAAAGTACTAGTGAATCTGAATGTGGGCGTAGGTAATAATGGCTAAACTTCACTGATAAATTTTCTAAAAATCAACCGC
ACTGCGGTCTATTACAATTTAATCCTTCTTTGAGACTTCAGCGCATGAACTTGTTTATTACCAATGTATCCTAAGAGTCGTTTGATATGACCTTTTGTCA
CGAGTCCAATTTCACCAGAAGTCGGTTAAATTAGGGACACCCCTACATTTTCTT

This is probably not a useful sequence.

Problems:
  • High predicted error rate
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.962949
Expected error %
6.25828
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0080C09
Clone
Clone name
hba-80c9
LE_HBa0080C09
C00HBa0080C09
P080C09
Clone type
BAC
Contamination
none
Estimated length
102,729
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found