Clone Read LE_HBa0080C09_SP6_20464

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0080C09_SP6_20464
Primer
SP6
ID from Seq. Facility
LE_HBa_080_C09-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
12 trimmed for vector and quality, 824 raw
Sequence
>LE_HBa0080C09_SP6_20464 (raw untrimmed)
TTTATAAAAATCCCTACGAATATTAATTTCCCTTTATGGGGGCCCCAAAAAGAGNCCGACGNCCCCGGAAGGCCTTTTGGGGGAAAAGANGNCNCAAAAA
GAAAAAAAAAAAGAAACAAGGAAGAGACGCGAGAGGGAGAGGAAAGAACCAAAGGGAAAGCAGCNCCCCCACCCGAACACAAAGAAGAAGGCGCGAGCGA
CACAAACAAACAACAAAGGAGCNACGAAACACCACAGGCACCAAACAAACACAAAAAAGAGAAGCCCCCAGAACGACACACGACGCAAAAGAACAAGCAA
AACAAAACAACAACACAAACCACCACCAACAACGAAGCCCAACCCCGCACGGGGACGCAAAAGAAAAAACAAGGNGGACAAAAAAGAAAACCGAAGAACG
GAACCAACAAAACAGACACGAAAAACACAAAAAGCGACCAAGAAAGCACAAAAGAGACGGGAAAAGAACAGCCAAGCACGCCAAAACAACACCCACCAGA
ACGCACAGGCCCGCGCGCCAGCCAGGCGGACCGAGAAGACACCAAGAGCACACACCGAAAAAAAAAGCCAAGGAAAAACAACGAACAAACGCGAAGAACA
AAACAAGAGAGAGAGAACCAGGAAAAAGGAGAAAACAAACCACACAACAAGCCAAAAAGCCCAAACCAAGAACACGCAACCCCAAGGCACCAAACCCACG
GGCAAAACAACAAAGGAGCACCAGCCACCAGGAGAGGAAAAAAAGCAAAGGCAGGGGCAAAAGCAAGACCACGACCACGACCCAACCAAAAGGCAACGCC
GGGGGCGAGCAACCCCAACACCCC
>LE_HBa0080C09_SP6_20464 (trimmed for quality and cloning vector)
AAAGAAAAAAAA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.312277
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0080C09
Clone
Clone name
hba-80c9
LE_HBa0080C09
C00HBa0080C09
P080C09
Clone type
BAC
Contamination
none
Estimated length
102,729
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found