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Clone Read LE_HBa0179K09_T7_204141

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0179K09_T7_204141
Primer
T7
ID from Seq. Facility
LE_HBa_179_K09-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
673 trimmed for vector and quality, 816 raw
Genbank Accession
DU095078
Sequence
>LE_HBa0179K09_T7_204141 (raw untrimmed)
CTGGGTCCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTATTACTCTTAAAACAAAGAGTTTCTTCTTTAGAGGGTCAGTTATATGATTTT
TTCCCCCTTTTCTGCAGGTGCTGTCCATAAAAATCCGAGGGACCTACTTTGATGTATTTGATATACGACCTCTTGAACTATTTCTGCCCAAGAGTTTAAG
AAAATTGAAGTTACAGCAAACGGAGGGAGACAAATTTGTCCATTGGTTAGAAAAGATCAGAGATATCCCTTGGTTCAACTTGCAAAGCTTATCTCTTGTC
TTGGACGTTATATCAGATAGTCTTCTCAGGACAGTTGTGAATTCTCTTCCTCTTTTGGTTGAGCTGGATCTTGAAGACAGACCTTTTATGGATCCAACGA
TAGAGGACTTGACCAACGTTGGACTGCAGCGTGTGCAGTCCTGCAAGCATCTAATTACCCTCGCAATTGTTCGAAGTAGTATGAATTATCGCACTGCATT
TAGGAGGGTAAACAATATGGGCATGTTCCTTCTTTCTGAAGGTTGTGGAAGGTTGGAATCAGTGAAACTTGGTGGGTTTGCAAATGTTACTGATGCTGGG
TTTTCGACAATTCTGAACTCATGCCCGGAAACTGAAGAAACTTGAAGTGTTGAATTCATGTCTATTATCAGACTTGGCGTTTTCATAATATGAGAGGAGT
TGCAGGGTCCCTAATTTGAATTAAGGTTGTTATCATTGCAGTCTTTCAACTAGTGAAACTTTGGAAGGGTTTGTCTCCTGTTAATGAAGTTGGAGGAATC
TGACCTCTAGTTGGGT
>LE_HBa0179K09_T7_204141 (trimmed for quality and cloning vector)
AGCTTATTACTCTTAAAACAAAGAGTTTCTTCTTTAGAGGGTCAGTTATATGATTTTTTCCCCCTTTTCTGCAGGTGCTGTCCATAAAAATCCGAGGGAC
CTACTTTGATGTATTTGATATACGACCTCTTGAACTATTTCTGCCCAAGAGTTTAAGAAAATTGAAGTTACAGCAAACGGAGGGAGACAAATTTGTCCAT
TGGTTAGAAAAGATCAGAGATATCCCTTGGTTCAACTTGCAAAGCTTATCTCTTGTCTTGGACGTTATATCAGATAGTCTTCTCAGGACAGTTGTGAATT
CTCTTCCTCTTTTGGTTGAGCTGGATCTTGAAGACAGACCTTTTATGGATCCAACGATAGAGGACTTGACCAACGTTGGACTGCAGCGTGTGCAGTCCTG
CAAGCATCTAATTACCCTCGCAATTGTTCGAAGTAGTATGAATTATCGCACTGCATTTAGGAGGGTAAACAATATGGGCATGTTCCTTCTTTCTGAAGGT
TGTGGAAGGTTGGAATCAGTGAAACTTGGTGGGTTTGCAAATGTTACTGATGCTGGGTTTTCGACAATTCTGAACTCATGCCCGGAAACTGAAGAAACTT
GAAGTGTTGAATTCATGTCTATTATCAGACTTGGCGTTTTCATAATATGAGAGGAGTTGCAGGGTCCCTAATT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.974018
Expected error %
0.300342
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g55590.1 Score 115 E Value 2e-26 Identity 12.90% Align. Length 518bp (76.97%) Frame 1
68414.m06363 F-box family protein ; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g17020.1 Score 88 E Value 4e-18 Identity 14.80% Align. Length 296bp (43.98%) Frame 1
68415.m01962 F-box family protein (FBL10) contains similarity to F-box protein Partner of Paired GI:10441427 from [Drosophila melanogaster]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAC36400.1| Score 306 E Value 3e-89 Identity 90.10% Align. Length 604bp (89.75%) Frame 1
hypothetical protein [Lycopersicon esculentum] emb|CAC36396.1| hypothetical protein [Lycopersicon esculentum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAC36388.1| Score 115 E Value 8e-25 Identity 12.90% Align. Length 518bp (76.97%) Frame 1
hypothetical protein [Capsella rubella]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0179K09
Clone
Clone name
hba-179k9
LE_HBa0179K09
C07HBa0179K09
P179K09
Clone type
BAC
Contamination
none
Estimated length
98,166
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found