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Clone Read LE_HBa0179K09_SP6_125423

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0179K09_SP6_125423
Primer
SP6
ID from Seq. Facility
LE_HBa_179_K09-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
642 trimmed for vector and quality, 1030 raw
Genbank Accession
DU053135
Sequence
>LE_HBa0179K09_SP6_125423 (raw untrimmed)
CCCGGGTTATTTCGGATTAACAAGGTTCCTCCTGTCATGATTTCTATAGAGCTGTGATTTCTGGTTTATGTAGGAAAGGAAACACATTTGCAGCATTTCA
GCTTCTATATGACATGACAGCCCTCGGATTTACTCCAGACTCTTACACCTATTCTTCATTGATCAGAGGATTATGCTTGGAAAAGATGTTGGTGGCTGCT
GTCGATGTATTCTACATGATGGAAGAAAATGGATATAGGCCTGATGTTGACAATTTCAATGCGCTTGTGCTTGGACTATGCAAATCCAAAAGAACAGACT
TGTCATTAAAGGTATTTGAGGACATGATCAGCAAAGGTTATATGCCTAATGAGATAACATATACCATTATAGTCGAAGGCATCATCCATGAAGATCACAA
GGAGCTTGCATCAGTAGTCCTAAGGGAACTGCACCGGAAAGAAGTAATAAGTAGAAATACTGTTGAAAGACTTGCTATGCAATATGAGCTTGAAGATATG
GCAGTATGCTGATCTTTCACAAAACCAATGGCTTGTGGTCACAGGATGAGAAACTAACAAAGGTTCTTCATTAGCAAATGCTAAATACACCCAAATAAAC
AAAGTTATTCTCATGCTGTATGTCAGATGGTAACTTTACACAACTAATAAACCTTCGGGATAATTGGTTTTCAGATATGGTAGTTGATTCATAGTAGGCT
TCAAATAGGTGAGTGGGGAAACTTGTCAATTCTCACTACCTTACTCTTGCTTACTCAATTTGCTGTTACAAAAAAAGTTGTTTATCTTTCTTTTCTATGG
CCTATTGTCTGAAGAACCAACTGTTTTTTCCTTTCCTATTGAAACTTCCAGCCTTCCTTCCCCTTGAATTATTGTTAATAACGAGGTCTTACTTGGAGAA
AAACCAAAAATTCTTTTCTACCAAGTAAAAATTATTTTTCCTTTGGTCATCCTCCCGTCCGTGCCATTCCCTACTAACCACCAATGAAAATTCCTTCTCT
TCGCTCCTTTTAACTTCCCTTATGAAAGGG
>LE_HBa0179K09_SP6_125423 (trimmed for quality and cloning vector)
TGATTTCTATAGAGCTGTGATTTCTGGTTTATGTAGGAAAGGAAACACATTTGCAGCATTTCAGCTTCTATATGACATGACAGCCCTCGGATTTACTCCA
GACTCTTACACCTATTCTTCATTGATCAGAGGATTATGCTTGGAAAAGATGTTGGTGGCTGCTGTCGATGTATTCTACATGATGGAAGAAAATGGATATA
GGCCTGATGTTGACAATTTCAATGCGCTTGTGCTTGGACTATGCAAATCCAAAAGAACAGACTTGTCATTAAAGGTATTTGAGGACATGATCAGCAAAGG
TTATATGCCTAATGAGATAACATATACCATTATAGTCGAAGGCATCATCCATGAAGATCACAAGGAGCTTGCATCAGTAGTCCTAAGGGAACTGCACCGG
AAAGAAGTAATAAGTAGAAATACTGTTGAAAGACTTGCTATGCAATATGAGCTTGAAGATATGGCAGTATGCTGATCTTTCACAAAACCAATGGCTTGTG
GTCACAGGATGAGAAACTAACAAAGGTTCTTCATTAGCAAATGCTAAATACACCCAAATAAACAAAGTTATTCTCATGCTGTATGTCAGATGGTAACTTT
ACACAACTAATAAACCTTCGGGATAATTGGTTTTCAGATATG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.962206
Expected error %
0.4596
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g79080.1 Score 192 E Value 1e-49 Identity 61.20% Align. Length 455bp (70.87%) Frame 3
68414.m09220 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g09900.1 Score 110 E Value 5e-25 Identity 39.60% Align. Length 431bp (67.13%) Frame 3
68414.m01114 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAC17075.1| Score 192 E Value 6e-48 Identity 61.20% Align. Length 455bp (70.87%) Frame 3
Contains repeats similar to RECA protein gb|L26100 from Acinetobacter calcoaceticus. [Arabidopsis thaliana] pir||T01047 hypothetical protein YUP8H12R.30 - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_178029.2| Score 192 E Value 6e-48 Identity 61.20% Align. Length 455bp (70.87%) Frame 3
pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0179K09
Clone
Clone name
hba-179k9
LE_HBa0179K09
C07HBa0179K09
P179K09
Clone type
BAC
Contamination
none
Estimated length
98,166
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found