Clone Read LE_HBa0179D24_T7_203988

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0179D24_T7_203988
Primer
T7
ID from Seq. Facility
LE_HBa_179_D24-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
451 trimmed for vector and quality, 775 raw
Sequence
>LE_HBa0179D24_T7_203988 (raw untrimmed)
CCGGCTCCCGGGGGGTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCCCGAATATGATATAAGAACGCCATTCAAAGCTCCAATGGCGGAGATATTGA
GGAGGTACTGGCTGTTACTCTTACCAAGCGACGTCGTAATTGAAGTCTCCGTCACCGGCGGCCGGCGGAGGAGAGAAAGTGGAATTGGCTGCCATGGAAG
GTGAGTCTGCAGAGAAGCTGGATTGGATCATATTGAATTGAAATCGAAATTCGTCTAACGTATCGGGTTTCGGCGGGTCGAACCGATTGACCCCAGAATG
TGATGATAAATGAGAACAACTAAAGGTAATTCCTTTAGTGTTAAGATCCAATTTCTTGATGTTAAACCCCTTTCAATAATTAAAGCCTATGATAATGATA
CAATTACTAATTTTTAATTGGGTCACCTTAAACCGACGTGTGGGAAGGAGTGTACACACACCTCAATGGAATTTCTAGGCCCTATAGATATGACAGGGCA
TCTTTCTAAAGGGCCTCTTCATTTCTGAGGGCCATAGATTGTGTGCTTCCTTCGCTGCCTCTTCTCTCCCACTTTTTTCTTATTCTGTTATCGTTTCACT
GAATTCATCCTATATTCTTTTATTACTTCTTTATCTTTATTTTTTTTTCTATATACATCTAAATTTTATTTAAATTGTTCTCCATTTTTATATTTAGTGA
CCCATCTTCTTTTTCTTTTTCTATAACATTATCTAACTAGATCCTTTCTTTCTCTCGCCTCTACCCACCCGTCTT
>LE_HBa0179D24_T7_203988 (trimmed for quality and cloning vector)
AGCTTCCCGAATATGATATAAGAACGCCATTCAAAGCTCCAATGGCGGAGATATTGAGGAGGTACTGGCTGTTACTCTTACCAAGCGACGTCGTAATTGA
AGTCTCCGTCACCGGCGGCCGGCGGAGGAGAGAAAGTGGAATTGGCTGCCATGGAAGGTGAGTCTGCAGAGAAGCTGGATTGGATCATATTGAATTGAAA
TCGAAATTCGTCTAACGTATCGGGTTTCGGCGGGTCGAACCGATTGACCCCAGAATGTGATGATAAATGAGAACAACTAAAGGTAATTCCTTTAGTGTTA
AGATCCAATTTCTTGATGTTAAACCCCTTTCAATAATTAAAGCCTATGATAATGATACAATTACTAATTTTTAATTGGGTCACCTTAAACCGACGTGTGG
GAAGGAGTGTACACACACCTCAATGGAATTTCTAGGCCCTATAGATATGAC

This is probably not a useful sequence.

Problems:
  • High predicted error rate
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.971471
Expected error %
3.76377
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0179D24
Clone
Clone name
hba-179d24
LE_HBa0179D24
C02HBa0179D24
P179D24
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found