Clone Read LE_HBa0179D24_SP6_125270

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0179D24_SP6_125270
Primer
SP6
ID from Seq. Facility
LE_HBa_179_D24-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
625 trimmed for vector and quality, 961 raw
Genbank Accession
DU053024
Sequence
>LE_HBa0179D24_SP6_125270 (raw untrimmed)
GGGGGGGGGTTTTTTTTAGTTAGCTTTCAGAATATACCAAAATCTCACGAGAAATCGTGGTCTCTTTTGTTGGGTCTTGCTGCCAGCATTTTTCAAGAAG
TTCTTTTTTCTTTGGATGAGTGCTCTTAGGAATTGTTGGCCGTAGACCCTGATAACCATGTTAAACCAAATGTGTGATGTGTTGGTTTAACTGGGGAAGA
TATCAACAGTACTAATGATGACAGTGGACTTTATACTACCTGTTGCACCACACCTATTGCTGCTTGTAATGGTGTTAAGTATGCATATGGAATCTGCTCC
ATCACAGAACATGAACATTAGTTGAGGTGTCAAGCAACTAACACGTGAACACAAATACATGCCACGCAGAGACTTACTTCTCCAGTCAGAAGTTCCCACA
GCACTATACCAAAGCTGAAAACATCAGCCTTGTGGTCATACGGTTTGTGTTCAATCACCTTCAACAAATAAAAACCATTTTAAGTACGACACTTGCATGC
AGCACGATGTTTAAGCACAAAACTGGGATACAAATGACGGGGATAATGTAAGAGAATGTTGTAGTATTAAGAGGAAAATAAGTCAAAACCATTTACCAAG
AGGTTCATATTTTTATACTTAATATTGCAGAATCAAATGTATCTCCATGGTATACTGTAAAGGAATCATGCAATGCATATTAACAAGTAATTCTGGTAGA
AGGTTATTGAAATCTCCTTGTGCATGAAGTATCCAAGATGCATCCAGGTGAACACAGAAACACAATTCACAGCTGTATGAAAGTGAAAAGGTGACAACCA
CACTAAGAGTGTGAAAACAAAATCCAAGTACAAGGAATAAATTGCAAAAGTCAGAGAGAATCAAACCTATAAAAGCACCCCCTGCTTAACCACACAAGAT
GCTTGAGGTGTTTCCCAAACACTAGGCCCAATCAACCTCAGGGAAATAATTGACTTTTTTT
>LE_HBa0179D24_SP6_125270 (trimmed for quality and cloning vector)
TTGGGTCTTGCTGCCAGCATTTTTCAAGAAGTTCTTTTTTCTTTGGATGAGTGCTCTTAGGAATTGTTGGCCGTAGACCCTGATAACCATGTTAAACCAA
ATGTGTGATGTGTTGGTTTAACTGGGGAAGATATCAACAGTACTAATGATGACAGTGGACTTTATACTACCTGTTGCACCACACCTATTGCTGCTTGTAA
TGGTGTTAAGTATGCATATGGAATCTGCTCCATCACAGAACATGAACATTAGTTGAGGTGTCAAGCAACTAACACGTGAACACAAATACATGCCACGCAG
AGACTTACTTCTCCAGTCAGAAGTTCCCACAGCACTATACCAAAGCTGAAAACATCAGCCTTGTGGTCATACGGTTTGTGTTCAATCACCTTCAACAAAT
AAAAACCATTTTAAGTACGACACTTGCATGCAGCACGATGTTTAAGCACAAAACTGGGATACAAATGACGGGGATAATGTAAGAGAATGTTGTAGTATTA
AGAGGAAAATAAGTCAAAACCATTTACCAAGAGGTTCATATTTTTATACTTAATATTGCAGAATCAAATGTATCTCCATGGTATACTGTAAAGGAATCAT
GCAATGCATATTAACAAGTAATTCT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.959512
Expected error %
0.5184
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g38470.1 Score 68 E Value 2e-19 Identity 50.00% Align. Length 387bp (61.92%) Frame 3
68417.m05436 protein kinase family protein similar to protein kinase [gi:170047] from Glycine max; contains Pfam protein kinase domain PF00069
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g35780.1 Score 67 E Value 1e-21 Identity 50.00% Align. Length 390bp (62.40%) Frame 3
68417.m05080 protein kinase family protein similar to protein kinase [gi:170047] from Glycine max, [gi:13124865] from Arachis hypogaea; contains Pfam protein kinase domain PF00069
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_463904.1| Score 71 E Value 1e-20 Identity 55.70% Align. Length 390bp (62.40%) Frame 3
putative serine/threonine protein kinase [Oryza sativa (japonica cultivar-group)] dbj|BAD07591.1| putative serine/threonine protein kinase [Oryza sativa (japonica cultivar-group)] dbj|BAD08131.1| putative serine/threonine protein kinase [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_450193.1| Score 69 E Value 5e-19 Identity 51.40% Align. Length 390bp (62.40%) Frame 3
putative serine/threonine-protein kinase ctr1 [Oryza sativa (japonica cultivar-group)] dbj|BAC79157.1| putative serine/threonine-protein kinase ctr1 [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0179D24
Clone
Clone name
hba-179d24
LE_HBa0179D24
C02HBa0179D24
P179D24
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found