Clone Read LE_HBa0161E16_T7_201428

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0161E16_T7_201428
Primer
T7
ID from Seq. Facility
LE_HBa_161_E16-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
514 trimmed for vector and quality, 857 raw
Sequence
>LE_HBa0161E16_T7_201428 (raw untrimmed)
TTGGGGCCCGGGGGGACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCCTCAGGTGTAACATCTCGAACCGTTAAGTGGGACATCTATTCAAGATGNGA
ATGCTCCAACTCCCTTCTTCTGGCCAAAATTCCTTTGGAACTCTTCCCCGAGCTAGCAAGCTACGAACCATATTGAGAATGGTTCTGTTCTTTCTCTCTG
CCACACCGTTTTGTTGCGGTGTATATGCTGTTGTGAGCTCTTTCCGAATGCCACTAGTCTTACAAAAATCAACAAATACCTTAGAGCAATATTCTCCTCC
GCGATCTGTTCGAAGGTTCTTAACAGTTCTTCCAGTCTCATTCTCCACGCGAGCTTTGAAGATTTTAAATACATTAAAGGCCTCCGACTTTTCTTGCAGA
ATATACACCCAAGTCTTTCCTGGAATAATCATCAATAAAAGTAATAAAATACTTTTTACTTCCATTCTAGATCGGTGTTATTGGCCCGCTAATATCTGAG
TGATCCAACCCCTTACCTCTTTGGCTCTTCCATGACTTTCTTTTTGGAAACTGAAAACGATGTTGTTTGTCTACAATTCTTTTTTTCTCTTCGTGGGAGG
GAACATCTATTTCTTGAATCCTCTTCTCCTTCCTCCATCTTTTAAGGATCTTCTTTTATTTTAGCTGTATTTATTTTTTCTATAAGTGTCACCTTTTTAT
TTGATATGGCATTGCATGCCTAGAGACTCATATACTATACTTACTGAGATTCATTTATTATAACCATCTATTTTTTATATCTATTTTCCTTATTTATTTT
ATTGTCAATTTTCGTAATTATTATTCATTGCTTTTCATATTCTATACTACAAATTTA
>LE_HBa0161E16_T7_201428 (trimmed for quality and cloning vector)
AGCTTCCTCAGGTGTAACATCTCGAACCGTTAAGTGGGACATCTATTCAAGATGNGAATGCTCCAACTCCCTTCTTCTGGCCAAAATTCCTTTGGAACTC
TTCCCCGAGCTAGCAAGCTACGAACCATATTGAGAATGGTTCTGTTCTTTCTCTCTGCCACACCGTTTTGTTGCGGTGTATATGCTGTTGTGAGCTCTTT
CCGAATGCCACTAGTCTTACAAAAATCAACAAATACCTTAGAGCAATATTCTCCTCCGCGATCTGTTCGAAGGTTCTTAACAGTTCTTCCAGTCTCATTC
TCCACGCGAGCTTTGAAGATTTTAAATACATTAAAGGCCTCCGACTTTTCTTGCAGAATATACACCCAAGTCTTTCCTGGAATAATCATCAATAAAAGTA
ATAAAATACTTTTTACTTCCATTCTAGATCGGTGTTATTGGCCCGCTAATATCTGAGTGATCCAACCCCTTACCTCTTTGGCTCTTCCATGACTTTCTTT
TTGGAAACTGAAAA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.97011
Expected error %
2.12475
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAG60117.1| Score 151 E Value 8e-36 Identity 16.10% Align. Length 476bp (92.61%) Frame 1
copia-type polyprotein, putative [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAG50765.1| Score 151 E Value 8e-36 Identity 16.10% Align. Length 476bp (92.61%) Frame 1
copia-type polyprotein, putative [Arabidopsis thaliana] gb|AAG50698.1| copia-type polyprotein, putative [Arabidopsis thaliana] pir||F96614 probable copia-type polyprotein T18I24.5 [imported] - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0161E16
Clone
Clone name
hba-161e16
LE_HBa0161E16
C02HBa0161E16
P161E16
Clone type
BAC
Contamination
none
Estimated length
93,916
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found