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Clone Read LE_HBa0161D01_SP6_201349

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0161D01_SP6_201349
Primer
SP6
ID from Seq. Facility
LE_HBa_161_D01-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
32 trimmed for vector and quality, 931 raw
Sequence
>LE_HBa0161D01_SP6_201349 (raw untrimmed)
AAACAAACACCCACCACATCAAGCTCATGACGTAATTCTCATGAACGATGTCATCTACATAAACAGCTTCACCTGAAAAATATTAATCCCTAAAAGACCN
AAAGTTCAGAANGGAGCAGACGCAAACCCTTAGGGAAACCTGGGAGAACAGAAGCGAGNCGGAGGACAAAAAAAAAAAGACACAAACCAGGCAAGACGAA
ATCAAGAACAGCAGAGGCGACAAAAAAAGACAACAAGGACCAGCGGGCAACAACAGAGAACCGAACCACAAGCCCCGACACCCAGCACAAAGACACAACC
CAAACACACAACAGAACACGCCAAAACCACGGAACGACACACCCAAGAGAGGGACCGAGAGCGCAACCAGACCCGCCGAACGAAACCCAAAACACAGAGC
AACCCAAGGCCAACACACACGAAACAAGCCCCACCCGACCACAACCCAGACCAGGGACGAACCCGCCGGCACCAGCCGCGACCAAACCGCGGGACCGACA
CCCCAAACACCCCACAACCGCGACAAAAAACACAACCNGCCAGGAACCCCACAAACAGGCACCCCCACACAANAGGGAAACCCCACGCGCGCACACAGAC
CAACACAAACAAACCCCCCACAAAACCCAACAGCCCAACAACCCCNCAGACCAAGGGAAGAAAAGGCCGGGACGGCAACCCACACACACCCNGGCCCAGN
AGAGNACCCACCACCACAAGGGGGGGACCCACCCAGCGGCCAGCAAAAAAGACACACAAAAAACAGAAACAAANAAACCACCGCGAGAAAAAAACCGAAA
NAGGCCGCCCACGCCGCCACACACAACGCACAACGCCACCAGNCGCGGCCCCAGACCAGCCCACACCACGAAAACGAGAACCCCCCCGNCCACCACCAAC
ACACNCACCGCCCGCNCCCCCACGCAAGCCG
>LE_HBa0161D01_SP6_201349 (trimmed for quality and cloning vector)
TCATCTACATAAACAGCTTCACCTGAAAAATA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.714615
Expected error %
0.376202
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0161D01
Clone
Clone name
hba-161d1
LE_HBa0161D01
C11HBa0161D01
P161D01
Clone type
BAC
Contamination
none
Estimated length
90,434
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found