Clone Read LE_HBa0155D20_SP6_200619

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0155D20_SP6_200619
Primer
SP6
ID from Seq. Facility
LE_HBa_155_D20-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1184 raw
Sequence
>LE_HBa0155D20_SP6_200619 (raw untrimmed)
TTGTGTTTTGTTATATTATTATATTTATTTATATGTACTTTATGTTAGATGAGGGTGAAGTCGATCTGTGTGTGTTGATTTGTCTTACTTCTCAGTCTGT
TGCTCATTTTATCTCTATTTCTCTCTGCCGGATTATATGCGNNTGAAGAGTACGTTAACTGTGAGAGAGAGTGGGATGCGGGGTGGTCTCTCTTCTACGA
AGGACAGATGTNAGTAGTGTGAACTACATAACAGAAGTAGTAGCCATAGCAAGGAGCGTGAGATGTGCGAACTGGTGCATAGNCACTTGACGGATAGTAT
TTNATCGAAGATACATATTATTCCGATGATGCTGACTGGAGGGTTAGCTTATGGAATTACTATGCGNCCACTAGCACCACCACAGACCCCACGTACCTAT
NCCGTACCGCTCTCCCTCCAACACCACTCCTCACTCGGACTAACTGNCGCTCCACTAGCGTCGAACACCGTAGGACTCTACCACTACTACCATACTACAC
GCCTACTATGTCTCCCTCTGTGCTTAGTCATTATGCTGCGCCCAATAGATTCATGCCAACGANTACTNGATAATACTACATGCCTCGCGACTCCGAACTG
AATGTCGTGCGGGAGATAGAACATACGATCGCGTCGTTATTCTTTTTNCTGACGCTCACCACCACAACANGCTCGACGAGCAGCAAGCTGCGTTGTAGTG
CGAAAAGAAGAGAAGTGCGTCGCGTTATGGATCTCTGTTGCTNCGTACCGCCCTTGACGCTGCTGCGGACAGCAATCAGCAATGGCTAATNCGTGACCTA
GACACGGNTCCGNGAAGTACGCACATAGTGACATGTATAGTGGGATAGGTGTGACATGAATCGCGCGTCGCTACATGCATACGGCGTAGAGACACTGACT
GAACGCGCACCACCTGATAGACGCTGACAGTCACAACACGTGCAACGCATGCGTCATACACAGGAATATAATAAACNGAGATACAATATATGTTGGAACC
GNACTCGTCGGACGTCTGATGCGCGACGTGCCTTGCTGCGTAGATAGGCTACGAAANGAGCAACAATAGCACGGTCCTATGGTATGCTCTCCATATGCTA
TCAATACATATGTGCGTACGTCTATGTCGTAGACTTAAGGCTCAATATCNACGCGATANCACGCTTGACTTGCTTCGAAGAGCA
>LE_HBa0155D20_SP6_200619 (trimmed for quality and cloning vector)
T

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • High predicted error rate
  • Low complexity
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0155D20
Clone
Clone name
hba-155d20
LE_HBa0155D20
C02HBa0155D20
P155D20
Clone type
BAC
Contamination
none
Estimated length
99,378
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found