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Clone Read LE_HBa0078I09_T7_19217

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0078I09_T7_19217
Primer
T7
ID from Seq. Facility
LE_HBa_078_I09-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 848 raw
Sequence
>LE_HBa0078I09_T7_19217 (raw untrimmed)
CACTACTTCCACATCTAGTTGCTGAGGGGCGCGGACGCGCCTTCTCAAGAAGACTGATTTTCGCTCGCTCCTACGGAGACGAATGCTAATATGGTTGCGT
TCGGTAGAAAGGAAGACTAAAGGACGAGCACACACGAAAAGGCCATTCTTTGAATGAAGCATGCGCTAGCAACACCCACAATTGTTGAATCTATCTTGCC
TGCGCGTATGTGCTAAGTCGACACGATTTGACCTGGAGAGTGTTTAGTTTTCCTGTGTATTTAGTGTGAGTGTTCTACGCAACTTGATATTGTTAGAACT
GTGCGCACAAAGATTCGGATTCTGCAATGCATATTTGCACGTCTACCTCTGTCCTTGGGCGCTGGAACAGCTAATCAACGTGCCAAAAACTACCATCAAC
TACACTTGAGACCGTANCAAGATCGTAGCTAGGTCATCGGCAGCTCGCGGGATGACTTATGGATGTGTTACTAGGGCTGGCTGACCTTAGTACGTGCTCT
CGATTGATGTCTTGCTCGAGTGTCGGTGCCTCCTAGCTACCTTGCGTCACCATCGCCCAGTCATCAACGTTCTATGACTGACTAAATGATGGTCTGTCCT
ACTTGCGATCAGTGTCCTTTTTGTCTCCGCGATCTCCTCTTCTG
GTGTGACGTCGGCCTCTGCCTACGTCGTTTTTTGGTGTGCGATATTACACGTCGAG
GTGAGTNCACTGTTCATAAGAAGGTGTATTGGGGCGGTAACTTACGAAGGGATACACATCCCATTGACACACGAAAGTAACGTCGCCTAGCTCGCCCATG
CTCCCAAAAACCAGATGTGAACCGTTGATGTGATCGATTGGTTTGTGT
>LE_HBa0078I09_T7_19217 (trimmed for quality and cloning vector)
GT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.750594
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0078I09
Clone
Clone name
hba-78i9
LE_HBa0078I09
P078I09
Clone type
BAC
Contamination
none
Estimated length
96,046
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found