Clone Read LE_HBa0076J09_T7_17729

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0076J09_T7_17729
Primer
T7
ID from Seq. Facility
LE_HBa_076_J09-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
709 trimmed for vector and quality, 851 raw
Genbank Accession
DU035425
Sequence
>LE_HBa0076J09_T7_17729 (raw untrimmed)
CCCGGTCCCGCGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCACTTTTATGCTTCATCATGTACACCCAAGTCATTCTTGAGTAGTCATCAAT
AATGGACACAAGAAATCTGCAGCCTCCCAAAGACTCAACACGGCATGGACCCCAGCAATCAGAATGGATATAATCAAGTGTGCCTTTTGTTCTATGAATG
GACTTTGGAAACTTGTTGCGATGTAGTTTTCCAAAAACACAATGTTCACAAAACTCTAGGCTCTTAACCTTATGACCAGCAAGAAAATCCTCCTTTGACA
GAATTTGCATCCCTCTTTCACCCATATGACCAAGTCTCATGTGCCATAACTTAGTCATATCCTTCTGGTGAAATTCTGACGATGCAACATGGGCTGAACC
TGTAACCGTGGAACCTTGTAGAAAATACAAAGTACCACGCATGGCACCTTTTAGAATCAGATTTGAACCCTTCCAGACCCGCAAGACTCCATCTTTTCCC
GACCAGCTGAATCCCTTGCTGTCCAAAAGACTGAAAGATATCAGATTTTTTGTCATCAATGGAACGTGCCTGACCTCGTTCAATGTGCAAAAGCTACCGT
CATGTGTCCTTATCTTGATCGAGCCTGTCCCAACCACCTTGCAGACAGAACTGTTGGCCATCGAGATGCTGCCTCCGTCTACCTGCTCATAAGTCGTGAA
CCACTCTCTCCTAGGACAGATGTGATAGGATGCCCCAGAATCGATAACCCCACACATCTGAATGAAGAATGTGCTCATCCGCAACATAGGTAATATCTTC
TTCCGGAATTGGTGTCTTTCTTACCAACCACCCACAGACACCGAATTGTTT
>LE_HBa0076J09_T7_17729 (trimmed for quality and cloning vector)
AGCTTCACTTTTATGCTTCATCATGTACACCCAAGTCATTCTTGAGTAGTCATCAATAATGGACACAAGAAATCTGCAGCCTCCCAAAGACTCAACACGG
CATGGACCCCAGCAATCAGAATGGATATAATCAAGTGTGCCTTTTGTTCTATGAATGGACTTTGGAAACTTGTTGCGATGTAGTTTTCCAAAAACACAAT
GTTCACAAAACTCTAGGCTCTTAACCTTATGACCAGCAAGAAAATCCTCCTTTGACAGAATTTGCATCCCTCTTTCACCCATATGACCAAGTCTCATGTG
CCATAACTTAGTCATATCCTTCTGGTGAAATTCTGACGATGCAACATGGGCTGAACCTGTAACCGTGGAACCTTGTAGAAAATACAAAGTACCACGCATG
GCACCTTTTAGAATCAGATTTGAACCCTTCCAGACCCGCAAGACTCCATCTTTTCCCGACCAGCTGAATCCCTTGCTGTCCAAAAGACTGAAAGATATCA
GATTTTTTGTCATCAATGGAACGTGCCTGACCTCGTTCAATGTGCAAAAGCTACCGTCATGTGTCCTTATCTTGATCGAGCCTGTCCCAACCACCTTGCA
GACAGAACTGTTGGCCATCGAGATGCTGCCTCCGTCTACCTGCTCATAAGTCGTGAACCACTCTCTCCTAGGACAGATGTGATAGGATGCCCCAGAATCG
ATAACCCCA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.973644
Expected error %
0.866821
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_474090.1| Score 258 E Value 8e-68 Identity 16.00% Align. Length 704bp (99.29%) Frame 2
OSJNBa0033G05.13 [Oryza sativa (japonica cultivar-group)] emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAD40363.2| Score 255 E Value 9e-67 Identity 15.90% Align. Length 704bp (99.29%) Frame 2
OSJNBa0093P23.9 [Oryza sativa (japonica cultivar-group)] ref|XP_471675.1| OSJNBa0093P23.9 [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0076J09
Clone
Clone name
hba-76j9
LE_HBa0076J09
C02HBa0076J09
P076J09
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found