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Clone Read LE_HBa0073N16_T7_17167

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0073N16_T7_17167
Primer
T7
ID from Seq. Facility
LE_HBa_073_N16-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
620 trimmed for vector and quality, 810 raw
Genbank Accession
DU034970
Sequence
>LE_HBa0073N16_T7_17167 (raw untrimmed)
CTCGGACCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGTGCTAGAGGTTTGTACTGCGATTCGAACTGTGTTGATGCCTAAGTATCTTC
AATGGCCTGATGAGAAGAAAATGAGGGATATAAAGGATGAGTATGAGGATATGTCAGGGATCACAAATGTTGTGGGATCAATGTATACAACTCATATACC
TATAATTGCTCCGAAAATTAGCGTTGCAGCTTATTTCAATAAGAGGCATACAGAGAGGAATCAGAAGACTTCGTATTCGATTACAGTTCAAGGGGTTGTT
GATCCAAGAGGGGTGTTTACTGATGTGTGTATCGGTTGGCCTGGTTCGATGCCTGATGATCAGGTACTGGAGAAATCCGCCCTTTTCCAGAGGGCGAATA
CAGGGTTACTGAACAACGTTTGGATTGTTGGTAGTTCTGGATACCCTTTAATGGATTGGGTTTTAGTGCCTTATACACAGCAGCAGCTAACTTGGACTCA
ACATGCTTTCAATGAGAAGATTGGTGAGGTTCAACGGGTGGCAAAGGAGGCGTTTGTAAGGTTGAAAAGGAGATGGTCTTGTTTGCAGAAAAGAACAGAG
GTGAAACTACAAGATTTGCCAGTGGTGCTAGGGGCGTGCTGCCGTCTTGCATAATATTTGTCCAAATGAGGAATGAGGAAAATGGATCCATAACTACATT
TTCAAGTTTCTTGATTGAGCAAATGCCTCCCAAAATCTCAATTTGAGATCGATCTATTGCTCAGATTCGTCAGGGAATGTCTATTGCTTAAATAATTTAT
AATCCATAAC
>LE_HBa0073N16_T7_17167 (trimmed for quality and cloning vector)
AGCTTGTGCTAGAGGTTTGTACTGCGATTCGAACTGTGTTGATGCCTAAGTATCTTCAATGGCCTGATGAGAAGAAAATGAGGGATATAAAGGATGAGTA
TGAGGATATGTCAGGGATCACAAATGTTGTGGGATCAATGTATACAACTCATATACCTATAATTGCTCCGAAAATTAGCGTTGCAGCTTATTTCAATAAG
AGGCATACAGAGAGGAATCAGAAGACTTCGTATTCGATTACAGTTCAAGGGGTTGTTGATCCAAGAGGGGTGTTTACTGATGTGTGTATCGGTTGGCCTG
GTTCGATGCCTGATGATCAGGTACTGGAGAAATCCGCCCTTTTCCAGAGGGCGAATACAGGGTTACTGAACAACGTTTGGATTGTTGGTAGTTCTGGATA
CCCTTTAATGGATTGGGTTTTAGTGCCTTATACACAGCAGCAGCTAACTTGGACTCAACATGCTTTCAATGAGAAGATTGGTGAGGTTCAACGGGTGGCA
AAGGAGGCGTTTGTAAGGTTGAAAAGGAGATGGTCTTGTTTGCAGAAAAGAACAGAGGTGAAACTACAAGATTTGCCAGTGGTGCTAGGGGCGTGCTGCC
GTCTTGCATAATATTTGTCC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.970849
Expected error %
0.505723
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g12010.1 Score 337 E Value 4e-93 Identity 26.20% Align. Length 602bp (97.10%) Frame 1
68418.m01404 expressed protein
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g29780.1 Score 294 E Value 2e-80 Identity 23.70% Align. Length 602bp (97.10%) Frame 1
68417.m04241 expressed protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB87674.1| Score 337 E Value 2e-91 Identity 26.20% Align. Length 602bp (97.10%) Frame 1
putative protein [Arabidopsis thaliana] gb|AAN73294.1| At5g12010/F14F18_180 [Arabidopsis thaliana] ref|NP_196762.1| expressed protein [Arabidopsis thaliana] gb|AAL24182.1| AT5g12010/F14F18_180 [Arabidopsis thaliana] pir||T48560 hypothetical protein F14F18.180 - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_463361.1| Score 317 E Value 1e-85 Identity 24.40% Align. Length 602bp (97.10%) Frame 1
B1097D05.23 [Oryza sativa (japonica cultivar-group)] dbj|BAC05572.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0073N16
Clone
Clone name
hba-73n16
LE_HBa0073N16
C08HBa0073N16
P073N16
Clone type
BAC
Contamination
none
Estimated length
91,905
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found