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Clone Read LE_HBa0073N16_SP6_17166

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0073N16_SP6_17166
Primer
SP6
ID from Seq. Facility
LE_HBa_073_N16-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
723 trimmed for vector and quality, 920 raw
Genbank Accession
DU034969
Sequence
>LE_HBa0073N16_SP6_17166 (raw untrimmed)
GTTTTTTTGGTGGCTTTTAGATAATCTCTTAGAAATCATTCCATGAAGGAGGAAACTTCTCGATCGTTGCAGCCACTTGAAAAACTTCATTTACTAGGGT
ATCTTCAGCAATCAGATCATGGAGAATAAGTTGAAGTTCCTGCACTTGTGATCCAACAGTTTTACTATCTACCATTTTATAGTCTAAAAACTTTGCGACC
ACAAACTTTTTCAAGCATGCATCTTCTGTCTTATATTTCTTCTCAAGTGCATTCCACAACTCTTTTGAAGTTGTTATTGCACTATATACATTATATAAGT
CATCCTCTAAAGCACTCAAAATGTAACTTTTACATAGGAAGTCTGTCTGTTTCCATGCTTCAACAATCATAAATGTTTCCCTGTCTGGCATATCATCAGC
AGGAACTGGAGTATCTTCACTTGTAAATTTCTGCAGACCAAGAGTGGTAAGCCAGAAAAATACTCGTCGCTGCCATCCTTTGAAATTCACACCTGTGAAT
TTACCCGGTTTCTCCGCTTGTGATACAAGAGTTCGGGTTGATGCAGCAACAGCCACTGTAACACCAGTGTTTTCCATTTCTGATAAATAAAATTGATACA
ATATAAGTAAGCAATAAATTATAATTGCAGACTTAAAGAAGTATAAAATCACAAAGATTTTTATCTCCACAAGAAACACAGATTTAAATAATTTCCTTAA
GATTGTTGCCCAATCTGTGTTATGAAAATCAGAAATTACTGGTTGTAATAAAATCATTCGAAACATGAAGTTACTAAGATTTTTAGAACCAGTAAATAAT
ATGAATAGAAATTTATTTTTTCTAAAAATATTTGAATCTGTTAAACTTTACAGAATCTGGAATACTCTTTTTTGATAATTTAGGAAGAAATCAAGTCCAC
TGAATTCAAGTGGCCCCTTA
>LE_HBa0073N16_SP6_17166 (trimmed for quality and cloning vector)
GAAATCATTCCATGAAGGAGGAAACTTCTCGATCGTTGCAGCCACTTGAAAAACTTCATTTACTAGGGTATCTTCAGCAATCAGATCATGGAGAATAAGT
TGAAGTTCCTGCACTTGTGATCCAACAGTTTTACTATCTACCATTTTATAGTCTAAAAACTTTGCGACCACAAACTTTTTCAAGCATGCATCTTCTGTCT
TATATTTCTTCTCAAGTGCATTCCACAACTCTTTTGAAGTTGTTATTGCACTATATACATTATATAAGTCATCCTCTAAAGCACTCAAAATGTAACTTTT
ACATAGGAAGTCTGTCTGTTTCCATGCTTCAACAATCATAAATGTTTCCCTGTCTGGCATATCATCAGCAGGAACTGGAGTATCTTCACTTGTAAATTTC
TGCAGACCAAGAGTGGTAAGCCAGAAAAATACTCGTCGCTGCCATCCTTTGAAATTCACACCTGTGAATTTACCCGGTTTCTCCGCTTGTGATACAAGAG
TTCGGGTTGATGCAGCAACAGCCACTGTAACACCAGTGTTTTCCATTTCTGATAAATAAAATTGATACAATATAAGTAAGCAATAAATTATAATTGCAGA
CTTAAAGAAGTATAAAATCACAAAGATTTTTATCTCCACAAGAAACACAGATTTAAATAATTTCCTTAAGATTGTTGCCCAATCTGTGTTATGAAAATCA
GAAATTACTGGTTGTAATAAAAT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.948303
Expected error %
0.32985
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g10090.1 Score 127 E Value 8e-30 Identity 17.60% Align. Length 362bp (50.07%) Frame 2
68415.m01047 hypothetical protein
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g04460.1 Score 91 E Value 6e-19 Identity 11.30% Align. Length 422bp (58.37%) Frame 2
68415.m00450 expressed protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAW28565.1| Score 206 E Value 6e-52 Identity 26.40% Align. Length 374bp (51.73%) Frame 2
putative polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAK70407.1| Score 202 E Value 7e-51 Identity 18.50% Align. Length 512bp (70.82%) Frame 2
pol polyprotein [Citrus x paradisi]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0073N16
Clone
Clone name
hba-73n16
LE_HBa0073N16
C08HBa0073N16
P073N16
Clone type
BAC
Contamination
none
Estimated length
91,905
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found