Clone Read LE_HBa0005C19_T7_1669

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0005C19_T7_1669
Primer
T7
ID from Seq. Facility
LE_HBa_005_C19-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
765 trimmed for vector and quality, 909 raw
Genbank Accession
DU021947
Sequence
>LE_HBa0005C19_T7_1669 (raw untrimmed)
CTGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGTTATTTTCTGCTTTTGTTTGTTATCTATCTCTTTATTTTATTATTCTTTTTT
ATTTGTGTATTTGTTAGTCAGACCTGTCTTTACTGTGTTAGGTGAAATATTTTATTGAATGATCTATTTTTTGAAGATTAGGTAATGTATTATATGTTTT
TGCATATGTAAAGATTTTCTTTGAAGCATCTGGTCCCTATTCCTTTACTCTTGGTAGAGTTCTTTATTTTTTTAATGTTCTGTTGTTGTCTAATACGACC
TTTTTCTCTTTACTTTTTGTCTATAATGTCCCATCAATGGTCAACAAGGTAGACCTATTATTCTGTTATGGGGCAAGTAGGTATTGACACCTAGAATTAT
TTACATTAAATAATTGACTCGTGTTTGGAAGGAGTATGGTCCAGATTTATTGTCATATATAAACATATGTGAATTTTATGAAAAGTTAAATTTTAGTAAG
GTCCAACAACTTCTACTCAAAGGATTTTCTGGGAGGCATTATTTGATTGAAGAGTATTCTAGCATAAGAACACTTCAAAAGGCATTGTTTGTTTAAGTTC
GGTGTACTTGAACTGTTTTTTGTAGATGAGGGGATGATGTTGTTCCAGCTATTGACATTAGCCACAATATTGAACCTTACCTAGTCATGGTAGATGTTGC
AATGGAAGGTTAATCAAGTGTGGAAGAAATGATGAAATTGAACCTTATCTAGTTATTGTAGATGCTGCAACTAAAGGCGAATCCAGCAAGGGAGAAAATG
ATGAAAATGAAACTTATCCTAATGACTCCAATAGAAAAAAATTGGAATCCCTTTTGGTTGGGAAAAGAAAAAAAAAAATTTTTTAGATCACACTTGGCCA
ATCTTTTAA
>LE_HBa0005C19_T7_1669 (trimmed for quality and cloning vector)
AGCTTGTTATTTTCTGCTTTTGTTTGTTATCTATCTCTTTATTTTATTATTCTTTTTTATTTGTGTATTTGTTAGTCAGACCTGTCTTTACTGTGTTAGG
TGAAATATTTTATTGAATGATCTATTTTTTGAAGATTAGGTAATGTATTATATGTTTTTGCATATGTAAAGATTTTCTTTGAAGCATCTGGTCCCTATTC
CTTTACTCTTGGTAGAGTTCTTTATTTTTTTAATGTTCTGTTGTTGTCTAATACGACCTTTTTCTCTTTACTTTTTGTCTATAATGTCCCATCAATGGTC
AACAAGGTAGACCTATTATTCTGTTATGGGGCAAGTAGGTATTGACACCTAGAATTATTTACATTAAATAATTGACTCGTGTTTGGAAGGAGTATGGTCC
AGATTTATTGTCATATATAAACATATGTGAATTTTATGAAAAGTTAAATTTTAGTAAGGTCCAACAACTTCTACTCAAAGGATTTTCTGGGAGGCATTAT
TTGATTGAAGAGTATTCTAGCATAAGAACACTTCAAAAGGCATTGTTTGTTTAAGTTCGGTGTACTTGAACTGTTTTTTGTAGATGAGGGGATGATGTTG
TTCCAGCTATTGACATTAGCCACAATATTGAACCTTACCTAGTCATGGTAGATGTTGCAATGGAAGGTTAATCAAGTGTGGAAGAAATGATGAAATTGAA
CCTTATCTAGTTATTGTAGATGCTGCAACTAAAGGCGAATCCAGCAAGGGAGAAAATGATGAAAA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.922232
Expected error %
0.487396
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT39304.1| Score 82 E Value 2e-14 Identity 19.90% Align. Length 215bp (28.10%) Frame 1
putative transposon MuDR mudrA-like protein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0005C19
Clone
Clone name
hba-5c19
LE_HBa0005C19
P005C19
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found