Clone Read LE_HBa0005C19_SP6_1668

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0005C19_SP6_1668
Primer
SP6
ID from Seq. Facility
LE_HBa_005_C19-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
639 trimmed for vector and quality, 930 raw
Genbank Accession
DU021946
Sequence
>LE_HBa0005C19_SP6_1668 (raw untrimmed)
AAAGGGGGTTCCGGCCAGCTATTTAAGTCGTTTCTTGATTCTTTTGTGATAGTTTTTCTTGATAATATTTTGGTTTATTCAAAAAAAAGAACATGCAGAC
AATCTTTGTACTAACTTACGTATTCTTGTGAAGCAGAAGTTGCATGCAAAATTTTCCAAGTGTTAATTTTGGATAAAATCGGTTTCATTGTTGGGGCATG
TGTTGTCGAAAGAAGGGGTAAGGCTAAATCACCAAAAGGCTTAAGCGGTTGAGAATTGGGTACAACCTAGTTTTGTGATGGAAGTAACGAGGTTTGTGGG
ACTTTTGAGTTACTATAGTCATTTCGTTAAGAATTTCACCATTACCAATTGAGGATAAAGACTTTGTTGTTTATTGTGATGTTTCACATTATGGATTGGG
TGTTGTGTTGATGTGGGATAAGAATCTCAAAGCTTATGTCTCGCGTCAATTGAAGGTGCACGAGACGGATTTATCCTGCTCGTGATTTGGAGTTGGCACC
AGTGATATTTACTCATAAAATCTGGTGACAATATTTGTATGGAGTTAAGTATGAGGTATTTACTGATCATCGTAGTTTATAGTATGTATTAACCCAAAAG
GATTTGAATCTGAGAAAGCAAAGATGGATGGAATTACTCAAGGATTATGATGTTACTATTTCAATACCATTCGGGTAAGGAAAATATTATGGCAAATGGT
TGAGTCAAAAAGCGATAAGTATGGGTAGTTTACCTCATTTTGTATGAACCAAGCGAATATTGGCCTGGGAGATTCAAACCTGGGAGTCTTAGTTTGTGCA
TTGGGGCTTCTCTTAAAAAAGGAGGGTAAAAAAAAAGTGAAGCTAACTCCCATTGTTAAACATGGGAATTCTTCCGCCCACAAATTTTTTTTTGATGAGT
ATGTTAACCGAAACTCATAAAACACAAAAA
>LE_HBa0005C19_SP6_1668 (trimmed for quality and cloning vector)
GTTTCTTGATTCTTTTGTGATAGTTTTTCTTGATAATATTTTGGTTTATTCAAAAAAAAGAACATGCAGACAATCTTTGTACTAACTTACGTATTCTTGT
GAAGCAGAAGTTGCATGCAAAATTTTCCAAGTGTTAATTTTGGATAAAATCGGTTTCATTGTTGGGGCATGTGTTGTCGAAAGAAGGGGTAAGGCTAAAT
CACCAAAAGGCTTAAGCGGTTGAGAATTGGGTACAACCTAGTTTTGTGATGGAAGTAACGAGGTTTGTGGGACTTTTGAGTTACTATAGTCATTTCGTTA
AGAATTTCACCATTACCAATTGAGGATAAAGACTTTGTTGTTTATTGTGATGTTTCACATTATGGATTGGGTGTTGTGTTGATGTGGGATAAGAATCTCA
AAGCTTATGTCTCGCGTCAATTGAAGGTGCACGAGACGGATTTATCCTGCTCGTGATTTGGAGTTGGCACCAGTGATATTTACTCATAAAATCTGGTGAC
AATATTTGTATGGAGTTAAGTATGAGGTATTTACTGATCATCGTAGTTTATAGTATGTATTAACCCAAAAGGATTTGAATCTGAGAAAGCAAAGATGGAT
GGAATTACTCAAGGATTATGATGTTACTATTTCAATACC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.944869
Expected error %
0.0356369
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 95 E Value 5e-50 Identity 44.20% Align. Length 629bp (98.44%) Frame 3
putative gag-pol polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38745.1| Score 94 E Value 1e-51 Identity 64.70% Align. Length 629bp (98.44%) Frame 3
putative polyprotein, 3'-partial [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0005C19
Clone
Clone name
hba-5c19
LE_HBa0005C19
P005C19
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found