Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0036P08_T7_142420

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0036P08_T7_142420
Primer
T7
ID from Seq. Facility
LE_HBa_036_P08-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
390 trimmed for vector and quality, 933 raw
Sequence
>LE_HBa0036P08_T7_142420 (raw untrimmed)
CCCATACCTGGTACCAGGGGAACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTCTTCCTTTTTCAATGGAGGACTTTAAGGGGGAGAAAGNAGAGAGA
GGNGAGAGCNNAGGGGCCTTTTTGGGGGAANNNAGNNNAAGNGCANGAAAAANGACNAAAANGACCCNNAGNCNANANANAANCACCCCCNAAANNACCN
AAAACACCCCNCACNNAAANNGGNCNNNNNGNAAAGGCNAAAGGNCCAAAANACGAANNNAACGAAGCGGGGAAGNGNCNCCGCANGAAGAAGCCAACAC
ACANNNNAANNCACAAAAANAAANNNNGNGANAGNGAGGGCCGNGNAGGCNGCACGNCGCACAACAGCCCACNGANNNNNGACNNNCGCGGGCNGNNGNG
GAAGCNAGCCCACCCANGNNAGGGNCCNCCNCCACGACCGNNNGGANGGNCCGGGGGGNGNCGNNANNGGANGNNNAGACCCNANANACNANANNCNACC
NAAAAAAAGNCNCNNANCACAAANNCNAGACNNCANNNGAACCNCAAAAACNANCCCCCAGACANAGCGACGNCAACGGANNCAANNAGGCGAGNNGNCG
GAGGNCACGGANGNNGACGCCAAGGCACNAAAACNNCCGGGAAGACNCCNNAACANNACNNNAGGACNAAAAAAAGAAGAAAAACCGNGACACACCCAGG
GGACGCCCAAGAAGGGGACCGGACAAACCCGAAAGCAACAGAAACCCCCCCCAAGGAACAACCGCNAAAAAGGCACCAAACCGGGAAAGGGAAAAGAAAG
AANCAAACCAACACCCCACCAACACCAAAAAAACAACAAGAGNGCAAACAAACCCACAAACAAAAGGGAGGCACCAACGCCCAAACAGCAACCNAAAACA
AAAGCCAAGGCCCACCGGAGAAACGCACCCCAA
>LE_HBa0036P08_T7_142420 (trimmed for quality and cloning vector)
AGCTTTCTTCCTTTTTCAATGGAGGACTTTAAGGGGGAGAAAGNAGAGAGAGGNGAGAGCNNAGGGGCCTTTTTGGGGGAANNNAGNNNAAGNGCANGAA
AAANGACNAAAANGACCCNNAGNCNANANANAANCACCCCCNAAANNACCNAAAACACCCCNCACNNAAANNGGNCNNNNNGNAAAGGCNAAAGGNCCAA
AANACGAANNNAACGAAGCGGGGAAGNGNCNCCGCANGAAGAAGCCAACACACANNNNAANNCACAAAAANAAANNNNGNGANAGNGAGGGCCGNGNAGG
CNGCACGNCGCACAACAGCCCACNGANNNNNGACNNNCGCGGGCNGNNGNGGAAGCNAGCCCACCCANGNNAGGGNCCNCCNCCACGACC

This is probably not a useful sequence.

Problems:
  • High predicted error rate
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
1.0216
Expected error %
37.218
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0036P08
Clone
Clone name
hba-36p8
LE_HBa0036P08
P036P08
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found