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Clone Read LE_HBa0036P08_SP6_142419

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0036P08_SP6_142419
Primer
SP6
ID from Seq. Facility
LE_HBa_036_P08-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
40 trimmed for vector and quality, 891 raw
Sequence
>LE_HBa0036P08_SP6_142419 (raw untrimmed)
TTCCAACAAAAAATCCACAAGAGAAGTTATCAAGAATTTCGGTTGAGACAAGACCATTTAAGGCGAGNANNNAACCNANGANGGNCCAAAGGANCCCTAA
AGGGGAAACGACNNAACGGNACNNNAGNAANNANCCAAGGGNACNCAANNAANAAANNNANACANGNAACCAAAGAAACAAAAGGGGNCAAACCGAAAGN
CNNAGGCGAACCGAGNANAAGGCAAGAAACANCCNAGCACGGAACCGAGGAAGGNCCNAAAGGGGNGAGANGGNNCCAANGACNNAGGGGNACANNAGNA
CANAACCNAGGACCCNAAANNAAGNAAAGGAAGGAANNAANNAANNAAGANAAANGCAAAAGGNNGACCGAAACCANAGGCAACACCACAANGNCAGAAN
NCAGGGCAAGCCAACACNCNCGGAGGGGAGGCAACNCAAGAANGGNNNCCCAGCAACCAGCNAACCAANNCACGAAACNAAACNAGCAAACCCGAAGGGG
GAAAAGNCAAGGNCAGCNCCNAAACCNAAAAAACACGNNCAAACCCAAACAAACACACGACNAAAGCCANAAAACAAGCGNGAGAAAAAAAAGGAACAAA
ACGCAAGAAAAAAGAAAAAAACGCGGAGCCGAAGGGCAAGGGCNCNNCAAGGNNCGNCCAAGGGGNCCCCGGAGAAAACCCCCACAAAAGGAAGGGGCGC
CCCCCGGACCCCACAACCCAGAGAACGNCCNCCCAAGGACCAAAAACCGGAAAACAAGGGAGGAACCCGCAACCGGGCCAACCCCAACCCAAAAGCCGGG
GACAAAAACAAAAGGAAAGGGCAAAAAAAAAGGGGGGGAAGGGGGGGGGCAAAAAAAGGGGCGGGGAAAAAAGAAAGGGAACAAACCAAAA
>LE_HBa0036P08_SP6_142419 (trimmed for quality and cloning vector)
AAAACAAGCGNGAGAAAAAAAAGGAACAAAACGCAAGAAA

This is probably not a useful sequence.

Problems:
  • High predicted error rate
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.615241
Expected error %
7.9549
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0036P08
Clone
Clone name
hba-36p8
LE_HBa0036P08
P036P08
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found