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Clone Read LE_HBa0036F16_T7_141956

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0036F16_T7_141956
Primer
T7
ID from Seq. Facility
LE_HBa_036_F16-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
160 trimmed for vector and quality, 823 raw
Sequence
>LE_HBa0036F16_T7_141956 (raw untrimmed)
GAGGGATCATTTATAGCGAATATCATCCTCTTTCGAGGGAATGACAACGAAACGATTGAACGGACTGCTATGTACCGACGATTAATCTAAAACGAAATTC
GACTCAGAGGACAAGGAAATTCGCAAAAAATGCCACCATGAGTTGAAGAAAGCAGCGGTAGAGTGGGGTGTTATGCACCTCGTTAACCATGGGATATCGG
ATGAGCTAATTGAACGTGTCAAGGTTGCTGGAAGGACCTTTTTTGATCTACCTGTTGAAGAGAAGGAGAAATATGCTAATGATCAAGCTTCTGGTAATGT
TCAAGGCTATGGAAGCAAGCTAGCAAATATTGCTTGTGGTCATCTTGACTGCGAGGATTACTCTCTCATTGTGTTTTCCCCTAGGACTAGCGCGATTTGG
CCATCTGGCCTAACTCCCCTGCTGACTACCTGTAATCCTCTTCACCTAGCCTCATGACTGCATAGTTTTCAATCTACTCGTATAAGACATCGGAGGTGTC
TTGTCTCGCTTGTGCGTTGTCATGACTAATCCACCTAGGCCCACTCTCCGCAGCAGTGTATGTGATCGTGAGCGTGATACTCACTGACGTAACATATTCT
CTAATGTACCAATAACTACACCTAACCTTACGTTTCGGTCTTCTACAATAATTTCTTATATACTGCATCTTCACAATATATAGACTGCTTAGATAGCAGA
TGTAGATAATACAAGTTGCTCTATCACAAAAATTCTTCCATTAAATCTTTTCACCACCTTCTCATACTTACATCAAGTATGTCATCTTCTCATACTACAG
CCGTGCTCCTTGTACTCTCTCAT
>LE_HBa0036F16_T7_141956 (trimmed for quality and cloning vector)
AAAAAATGCCACCATGAGTTGAAGAAAGCAGCGGTAGAGTGGGGTGTTATGCACCTCGTTAACCATGGGATATCGGATGAGCTAATTGAACGTGTCAAGG
TTGCTGGAAGGACCTTTTTTGATCTACCTGTTGAAGAGAAGGAGAAATATGCTAATGATC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.94022
Expected error %
1.0536
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g22880.1 Score 80 E Value 2e-16 Identity 22.60% Align. Length 158bp (98.75%) Frame 2
68417.m03304 leucoanthocyanidin dioxygenase, putative / anthocyanidin synthase, putative similar to SP|P51091 [Malus domestica]; contains PF03171 2OG-Fe(II) oxygenase superfamily
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAR01567.1| Score 99 E Value 3e-20 Identity 26.40% Align. Length 158bp (98.75%) Frame 2
anthocyanidin synthase [Sinningia cardinalis]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
sp|P51092|LDOX_PETHY Score 96 E Value 2e-19 Identity 28.90% Align. Length 158bp (98.75%) Frame 2
Leucoanthocyanidin dioxygenase (LDOX) (Leucocyanidin oxygenase) (Leucoanthocyanidin hydroxylase)
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0036F16
Clone
Clone name
hba-36f16
LE_HBa0036F16
C08HBa0036F16
P036F16
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found