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Clone Read LE_HBa0036F16_SP6_141955

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0036F16_SP6_141955
Primer
SP6
ID from Seq. Facility
LE_HBa_036_F16-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
572 trimmed for vector and quality, 939 raw
Genbank Accession
DU046342
Sequence
>LE_HBa0036F16_SP6_141955 (raw untrimmed)
TCCATTAAAAAACAACTTAGTTATNGACTACTTATGTTTTTACTATTAACTAGTCTGCCTATTTCTTTCTTATGGCTAAATGTTGATAGGATCTTAATTC
ACTTTGGCCAACAAGAAGATATTTCAATTATAGCCAAAAGTTATCTAATTTACCTCCTCCCTGATTTAGTTGTTACCTCTTTTTTATGCCCTTTAAAGGC
TTATTTAAGTACACAAAATGTTACTATCCCAATTATGTTAAGCTCAACTTTAGCAATTGCTTGTCATGTACCAATAACCATGTTGTTATCAAGAAGTAAA
GGGATTATAGGAGTGTCAATGTCAAATTGGATAACGAACTTCTTGATTATGTTATTGTTGGCTATTTATGTTGTGATCGCGGAGAATAGTAAAGGGGGGA
AATGGAAAGAAGGAGGATGGTGTGAACAAGGATATCGCGATTGGATCAGATTGCTTAAGTTATGTGGACCATGTTGTCTTACTACATGTCTTGAATGGTG
GTGTTATGAAATTTTGGTTTTGTTAACAGGGCATTTACCAAATGCTAAACAAGCTATTGGTGTTATAGCCATTGTGTTGAACTTTGATTATTTGCTTTTC
TCTGTTATGCTTTCGTTATCAACTAGTGGCATCTATTTGTGTGTCTAATGAGCTTGGTGCAGATAGTCCCGGCCCTTTGCGTACGGGCAACCTATGTATC
CTAAACTATGAGCATTGGCTCGGGGTTGTTGGTGGGCTCTGTTATGCAGGGGCAAGGGGTGTTGGGGGCCCTTGTTTACCTTGCAAAGGGATATTAGTAG
GGTTACAAAATATGTTAAAAAGGACTACTTAAATTGAAATTCCTTATGAATTTAGGACGCTCCACCGGGAATCTAGCAGTGCTGGTGATATATCTATATT
TTATCTTCTTTTTGTTATTCTTCAGTGTTGTTCTCCTCA
>LE_HBa0036F16_SP6_141955 (trimmed for quality and cloning vector)
GACTACTTATGTTTTTACTATTAACTAGTCTGCCTATTTCTTTCTTATGGCTAAATGTTGATAGGATCTTAATTCACTTTGGCCAACAAGAAGATATTTC
AATTATAGCCAAAAGTTATCTAATTTACCTCCTCCCTGATTTAGTTGTTACCTCTTTTTTATGCCCTTTAAAGGCTTATTTAAGTACACAAAATGTTACT
ATCCCAATTATGTTAAGCTCAACTTTAGCAATTGCTTGTCATGTACCAATAACCATGTTGTTATCAAGAAGTAAAGGGATTATAGGAGTGTCAATGTCAA
ATTGGATAACGAACTTCTTGATTATGTTATTGTTGGCTATTTATGTTGTGATCGCGGAGAATAGTAAAGGGGGGAAATGGAAAGAAGGAGGATGGTGTGA
ACAAGGATATCGCGATTGGATCAGATTGCTTAAGTTATGTGGACCATGTTGTCTTACTACATGTCTTGAATGGTGGTGTTATGAAATTTTGGTTTTGTTA
ACAGGGCATTTACCAAATGCTAAACAAGCTATTGGTGTTATAGCCATTGTGTTGAACTTTGATTATTTGCTT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.946902
Expected error %
0.405
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g22790.1 Score 234 E Value 2e-62 Identity 19.00% Align. Length 566bp (98.95%) Frame 1
68417.m03289 MATE efflux family protein contains Pfam profile PF01554: Uncharacterized membrane protein family
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g23030.1 Score 140 E Value 6e-34 Identity 12.90% Align. Length 563bp (98.43%) Frame 1
68417.m03321 MATE efflux protein-related contains Pfam profile PF01554: Uncharacterized membrane protein family
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB79234.1| Score 234 E Value 8e-61 Identity 19.00% Align. Length 566bp (98.95%) Frame 1
predicted protein [Arabidopsis thaliana] emb|CAA16564.1| predicted protein [Arabidopsis thaliana] gb|AAO22621.1| putative integral membrane protein [Arabidopsis thaliana] ref|NP_194010.1| MATE efflux family protein [Arabidopsis thaliana] pir||T04574 hypothetical protein T12H17.180 - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAP44738.1| Score 204 E Value 9e-52 Identity 17.00% Align. Length 563bp (98.43%) Frame 1
putative membrane protein [Oryza sativa (japonica cultivar-group)] ref|XP_470497.1| putative MatE efflux family protein [Oryza sativa (japonica cultivar-group)] gb|AAP21388.1| putative MatE efflux family protein [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0036F16
Clone
Clone name
hba-36f16
LE_HBa0036F16
C08HBa0036F16
P036F16
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found