Clone Read LE_HBa0169H11_SP6_14007

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0169H11_SP6_14007
Primer
SP6
ID from Seq. Facility
LE_HBa_169_H11-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
7 trimmed for vector and quality, 881 raw
Sequence
>LE_HBa0169H11_SP6_14007 (raw untrimmed)
TTTTTTTCCAATCCCGCCCCTTTGTGTTTGCTCCCCCTTCCCAGTAAGAAGCGGCCTACTGATGTAAGATCGCTAGGTCCCCTTGTTTGAGCATTGGCGG
TCATCAGGATCATAACTAAAATCTCTGCTCTAGACACTTAAGAAGGTGGTGAGCAATTAAGTATATGAACATCAGATGGCCTTTATTAAGGAGAGACATA
TTGGATGCAACTCGCATCGCAAGTGAATGC
GGGGACTCGCGGTAGACAGATGATCGACCTGGCGCCATGAGTTAGATGGATCCTAAAGAAAGCTGATGAC
CGTATAGACGACAATTTTGTGATGAACGTCCATCGGACACATGGGTATTGGAGATATATAGCACCAAAAGGATTGCTTCTCGCCTTAACTATGACAAGCG
TTACATGTGAGTTGATGGATACTCCGTAGGGAATCTTACCCCCTTATTACATTAACAAACCTATGGTTCACCTGATAACATTGCATCTCACGGGGAGTGA
AATCTTGGATACCTGTACTCTGTTTCTTCATCGCAACAATATCAAATCCAGCATATTCCCATACACTTAGGTGTTGGTAAATTTAGCTATCTCTTCTATT
ATGTTATTAATTATTATATTTTCCTTCCATTATAAACACTTTGTCATAGCGGCTTCTTCCAATGTACTTCCTCGTCATCTCTCTCCTATCTCTTGTTCCT
TCTTATTTCTGACCTCTCGCATTACCAATCCCGTCAGTCCGATCATCTTTACTTCGATATCCTCACTCCAATTCTCTCACCTACGTCTCCTAGCATATCC
TACCTTAAGAATCATTCTTAACTTTGCTTTATTATTCCTTCTAGTTAATTAATGAACATTTTTAACATTTTATATACTTGT
>LE_HBa0169H11_SP6_14007 (trimmed for quality and cloning vector)
GGGGACT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.801154
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0169H11
Clone
Clone name
hba-169h11
LE_HBa0169H11
P169H11
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found