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Clone Read LE_HBa0030B22_SP6_138703

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0030B22_SP6_138703
Primer
SP6
ID from Seq. Facility
LE_HBa_030_B22-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
704 trimmed for vector and quality, 792 raw
Genbank Accession
DU042242
Sequence
>LE_HBa0030B22_SP6_138703 (raw untrimmed)
AAGGGGACCCTATNNGAANNCCACTTAAGAACTTATTTTCACGATGAACAAGTATCATTNTGTAGGTGAAGATATTTCTGAAGTGTATCCATGTTGGAGA
TTATTCTTTGATGGAGCGGCAAATCAACAAGGTAAAGGTATTGGAGTAGTCTTAGTGTCACAATCTGGTCAGCACTATCCCATGGCGGCTAAGCTCTGAT
GTAATTGCACAAACAACATGGCCAATTACAAAGCTTGTGTTCTTGGTTTGAAAATGGCCATAAGCATGAATGTCTACGAGTTGTTGGTTATTGGAGATTC
AGATTTTTTGATTCATCAAGTACAAGGAGAATGGGCTGTGAAGAACCCAAAGATTATACCTTACATACAATATGTGCACAAGTTGTGCAAAAGATTTCGT
AAGATTGAGTTCATGCATACTCCCAGAATACAGAATGAATTGGCCGATGCTCTTGACACCATCACTTAGATGATTAAACTTCCGGACAAATATTATATTG
ATCCTCTGGATATAGAGTTGAAAGAACATCCAGTTCATTATTCCCATGTTGAAGCAAAACCAGACGTTTTACCTTCGTATTTTCATATAAAGAAGAATTT
GGAGTCTGGAACTTATCCCGAAGATGCCACGTCCAATTAGAAGAAGTCGATACGCTGTATAGCTCTCTATTTATTTATAAGTGGAAAAGTCCTATATAAG
AGGACTCTAGACTTAGGTCTTCTCAGATGTGTTATGCCGTTGAAGCTGCGAAACTGATTGAACAGAGACATGCTGGGAGTTTGTGTACGCAA
>LE_HBa0030B22_SP6_138703 (trimmed for quality and cloning vector)
TTATTTTCACGATGAACAAGTATCATTNTGTAGGTGAAGATATTTCTGAAGTGTATCCATGTTGGAGATTATTCTTTGATGGAGCGGCAAATCAACAAGG
TAAAGGTATTGGAGTAGTCTTAGTGTCACAATCTGGTCAGCACTATCCCATGGCGGCTAAGCTCTGATGTAATTGCACAAACAACATGGCCAATTACAAA
GCTTGTGTTCTTGGTTTGAAAATGGCCATAAGCATGAATGTCTACGAGTTGTTGGTTATTGGAGATTCAGATTTTTTGATTCATCAAGTACAAGGAGAAT
GGGCTGTGAAGAACCCAAAGATTATACCTTACATACAATATGTGCACAAGTTGTGCAAAAGATTTCGTAAGATTGAGTTCATGCATACTCCCAGAATACA
GAATGAATTGGCCGATGCTCTTGACACCATCACTTAGATGATTAAACTTCCGGACAAATATTATATTGATCCTCTGGATATAGAGTTGAAAGAACATCCA
GTTCATTATTCCCATGTTGAAGCAAAACCAGACGTTTTACCTTCGTATTTTCATATAAAGAAGAATTTGGAGTCTGGAACTTATCCCGAAGATGCCACGT
CCAATTAGAAGAAGTCGATACGCTGTATAGCTCTCTATTTATTTATAAGTGGAAAAGTCCTATATAAGAGGACTCTAGACTTAGGTCTTCTCAGATGTGT
TATG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.97274
Expected error %
0.407
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU90285.1| Score 185 E Value 8e-46 Identity 14.40% Align. Length 638bp (90.62%) Frame 1
putative gag/pol polyprotein, 3'-partial [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT39963.1| Score 179 E Value 5e-44 Identity 14.20% Align. Length 638bp (90.62%) Frame 1
putative polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0030B22
Clone
Clone name
hba-30b22
LE_HBa0030B22
P030B22
Clone type
BAC
Contamination
none
Estimated length
91,253
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found