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Clone Read LE_HBa0028F18_SP6_138119

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0028F18_SP6_138119
Primer
SP6
ID from Seq. Facility
LE_HBa_028_F18-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
543 trimmed for vector and quality, 912 raw
Genbank Accession
DU047654
Sequence
>LE_HBa0028F18_SP6_138119 (raw untrimmed)
ATTAAATAGGTGACATACTTTTTGTTTTCCTGCAACTTNGACAGGTAGGTGAACGCATTTTATGCCGCCACCCATTTAGTGAATCTAAAAGGGCATCCGT
AGTGCCCCAGCGTGTTGAGGAACTTTTAAAGTGTTTTTGGCCCGGAAAGTCAGGTAAGAGCTGTTATCCCTATATTGTATTAATGTTAGTTTGAATTATT
CGTATTTCTACCAGAAGCATGACCCTACTTTTCCATAGACTCCAAATTATTGAGTGAAGCCCCTGTTGCCTGTTGGTAACATTTTTAAGTTACAGTGAGA
TATTAAAAAATGACTAGTTCAGTTCAGCTGCTCCTTAAGTTAATAAGTGTTGACTAATGGATGGTGGTTTGTCATTCTGAAGCTAAAACAAGAGAAGACC
TTCCTCCTCTGAAGGAGATCAGGGAAAGATGTATTGCACAACTGGACCAAATGCGACCAGATCACATGAGAAGGCTGAACCCAACACCATACAAGGTAAG
TACCAATTGTTCTCTTTTTTTCTCTCAATTAAAAATTTTAAAAGGAAATTGGGGAGGGGGGGGGGGGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNN
>LE_HBa0028F18_SP6_138119 (trimmed for quality and cloning vector)
TTTCCTGCAACTTNGACAGGTAGGTGAACGCATTTTATGCCGCCACCCATTTAGTGAATCTAAAAGGGCATCCGTAGTGCCCCAGCGTGTTGAGGAACTT
TTAAAGTGTTTTTGGCCCGGAAAGTCAGGTAAGAGCTGTTATCCCTATATTGTATTAATGTTAGTTTGAATTATTCGTATTTCTACCAGAAGCATGACCC
TACTTTTCCATAGACTCCAAATTATTGAGTGAAGCCCCTGTTGCCTGTTGGTAACATTTTTAAGTTACAGTGAGATATTAAAAAATGACTAGTTCAGTTC
AGCTGCTCCTTAAGTTAATAAGTGTTGACTAATGGATGGTGGTTTGTCATTCTGAAGCTAAAACAAGAGAAGACCTTCCTCCTCTGAAGGAGATCAGGGA
AAGATGTATTGCACAACTGGACCAAATGCGACCAGATCACATGAGAAGGCTGAACCCAACACCATACAAGGTAAGTACCAATTGTTCTCTTTTTTTCTCT
CAATTAAAAATTTTAAAAGGAAATTGGGGAGGGGGGGGGGGGT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.977023
Expected error %
0.5692
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g23420.1 Score 75 E Value 2e-14 Identity 70.80% Align. Length 477bp (87.85%) Frame 3
68415.m02796 nicotinate phosphoribosyltransferase family protein / NAPRTase family protein contains Pfam domain PF04095: Nicotinate phosphoribosyltransferase (NAPRTase)
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g36940.1 Score 70 E Value 7e-13 Identity 26.30% Align. Length 113bp (20.81%) Frame 3
68417.m05236 nicotinate phosphoribosyltransferase family protein / NAPRTase family protein contains Pfam domain PF04095: Nicotinate phosphoribosyltransferase (NAPRTase)
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAP69614.1| Score 75 E Value 7e-13 Identity 75.60% Align. Length 477bp (87.85%) Frame 3
nicotinate phosphoribosyltransferase-like protein [Medicago truncatula]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAN71931.1| Score 75 E Value 9e-13 Identity 23.60% Align. Length 143bp (26.34%) Frame 1
unknown protein [Arabidopsis thaliana] ref|NP_179923.2| nicotinate phosphoribosyltransferase family protein / NAPRTase family protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0028F18
Clone
Clone name
hba-28f18
LE_HBa0028F18
C02HBa0028F18
P028F18
Clone type
BAC
Contamination
none
Estimated length
85,093
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found