Clone Read LE_HBa0026L22_T7_136880

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0026L22_T7_136880
Primer
T7
ID from Seq. Facility
LE_HBa_026_L22-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 839 raw
Sequence
>LE_HBa0026L22_T7_136880 (raw untrimmed)
CGGGCGGTGGGAGATATTGGGACGGTCTCGGGCGCTCCCCCTTTTAGAGAGGGGTGGNTCNTTGTTATGGGTGGTTGTGTATGANGTTGTTAAGGTATGT
GGGAGTTTTATATTGTGAGGCAAATAGTGTGGGCCCTACTACATTGGATCTGAGCACTTGATTCTCGTTTTAGATTTCAGCCAGCGGTGGCAGGGGTCAT
CGTTCTCATGTCTTCTGATTACGCTCCCTTCCGTCTAGAGTAGTGCTGAATATTTTATTAAGAGACGTGTTACATTCACGCATTCGTCCACTTTCGTTAT
CCATGGCCACACTAACGTGGGGAAGATGGAATTTAGGAGATGGCCGAGCACTAGCTAGCAATACTATCCTCCCCTCCCTCACCGTCAGGGAGTCCTTCAA
GATGAAAGGTAANTATGGGGAGAGCATAATAGAGGCCGTGCT
TTTTTTGTGTCGAGCCGCGTGCTGTCGCTTTGACTACACTCTCAAAGTGGGCTGGCGT
ACCTATTGTCTGTACCATAATTGAAACGAAGATGAGAGGAGGCGGGTGTATGTCGACGAGACTGTTGAGAATATAATCTAGTGCGAGGTCCTGTAGTGGA
GGGTGTAGTGTCAGGAATAGATGACCTGAGAGCGTGAATAGTGGGCGGACGTGCCATTAGATGGTTGATGAGAGTAAAGAGGTAGGGATCGGAGTGTGAG
AGAGACGACGATATCAAGTGCTTTCGAGAGCGATGACGCACGCACCCGACCGCACCCGGACACGCGTAGCACGGCTCTCTGGCGAGAACAAGAGAAACGT
GAGGTGACTGTAGTAATAGGGTGAGCGAGGAGGAGGACA
>LE_HBa0026L22_T7_136880 (trimmed for quality and cloning vector)
TT

This is probably not a useful sequence.

Problems:
  • High predicted error rate
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
4.3688
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0026L22
Clone
Clone name
hba-26l22
LE_HBa0026L22
C02HBa0026L22
P026L22
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found