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Clone Read LE_HBa0026J12_T7_136764

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0026J12_T7_136764
Primer
T7
ID from Seq. Facility
LE_HBa_026_J12-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
739 trimmed for vector and quality, 942 raw
Sequence
>LE_HBa0026J12_T7_136764 (raw untrimmed)
CCTAACTTGGGTCCCGAGGGGTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGTAAAAGAAGTTTCAAAGAGTCGATAGATAAGCATACCTCCACTCT
AGTGTTGACCTTACTGCTTTGTAGCAAAGGGTTTGTAGTGTATTGTGACGCTTTTCGAGTGGGTTTAGTTTGTTTCCTCATGCAACATGGTAAGGTGATA
GCTTATGCCTCTAGACAACTCAAGGTGAACGAGAAGAATTATCCAACTTATGACCTTGAATAAGAAGTTGTAGTGTTTGCCTTTAAAATATAGAGGCATT
ATCTTTATGGTGTCCATGTGGATGTATTTACCGACTACAAAAGCCTTCAATATGTGTTCACTCAAAAAGAGTTGAATCTCCAACAAAGAATATGGTTGGA
ACTCTTGAAGGATTACGACATGAGTGTTCTATACCACCCCGGCAAGGACAATATGGTTGTGGACATTTTAAGTCGTATGATCATAGGTAGTGTGTCTCAT
GTAGAGGAAGGTAAGATATCCCTAGTGAAGGATGTTCATAGATTGGCCTGGTTGGGTGTTCGGTTAGAAGATTCTCCGAAATGCGGTGTTATGGTTCATT
ATAACTCCGAATCATCTTTAGTGGTTTGGGTAAGTCTAAACAACATCTTGATCCTCTATTGATGGAGTTGAAAAAATCAGTACTTACTAAGTTTAATGAT
CCATTCCCCCCAAGGGGGATGGTATGCTTAAGTACCAAGGTAGATTGTGTGTATCGGATGTTGATAATTTGATTGGGGGAAATTTGGAAGAAGCTTATGT
CTCCTATTTTCAATTCATCCAGTGGCACCAAAATGATCGTGATCTCCAAAGGTTTATTGGGGGATGGGTTAAAAAGCGACATACAAGAATTTGTAATAGG
GTCCTAATTTCTAACAATTTAAACCAAGCTACAAGCCGGAGG
>LE_HBa0026J12_T7_136764 (trimmed for quality and cloning vector)
AGCTTGTAAAAGAAGTTTCAAAGAGTCGATAGATAAGCATACCTCCACTCTAGTGTTGACCTTACTGCTTTGTAGCAAAGGGTTTGTAGTGTATTGTGAC
GCTTTTCGAGTGGGTTTAGTTTGTTTCCTCATGCAACATGGTAAGGTGATAGCTTATGCCTCTAGACAACTCAAGGTGAACGAGAAGAATTATCCAACTT
ATGACCTTGAATAAGAAGTTGTAGTGTTTGCCTTTAAAATATAGAGGCATTATCTTTATGGTGTCCATGTGGATGTATTTACCGACTACAAAAGCCTTCA
ATATGTGTTCACTCAAAAAGAGTTGAATCTCCAACAAAGAATATGGTTGGAACTCTTGAAGGATTACGACATGAGTGTTCTATACCACCCCGGCAAGGAC
AATATGGTTGTGGACATTTTAAGTCGTATGATCATAGGTAGTGTGTCTCATGTAGAGGAAGGTAAGATATCCCTAGTGAAGGATGTTCATAGATTGGCCT
GGTTGGGTGTTCGGTTAGAAGATTCTCCGAAATGCGGTGTTATGGTTCATTATAACTCCGAATCATCTTTAGTGGTTTGGGTAAGTCTAAACAACATCTT
GATCCTCTATTGATGGAGTTGAAAAAATCAGTACTTACTAAGTTTAATGATCCATTCCCCCCAAGGGGGATGGTATGCTTAAGTACCAAGGTAGATTGTG
TGTATCGGATGTTGATAATTTGATTGGGGGAAATTTGGA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.966315
Expected error %
0.6225
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 245 E Value 3e-68 Identity 63.90% Align. Length 720bp (97.43%) Frame 3
putative gag-pol polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 243 E Value 2e-67 Identity 63.40% Align. Length 720bp (97.43%) Frame 3
putative retrotransposon protein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0026J12
Clone
Clone name
hba-26j12
LE_HBa0026J12
C06HBa0026J12
P026J12
Clone type
BAC
Contamination
none
Estimated length
99,117
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found