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Clone Read LE_HBa0026J12_SP6_136763

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0026J12_SP6_136763
Primer
SP6
ID from Seq. Facility
LE_HBa_026_J12-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
724 trimmed for vector and quality, 942 raw
Sequence
>LE_HBa0026J12_SP6_136763 (raw untrimmed)
CCCTACCTGGGGCTAGAAGAGGTTCAGACTCTAGCTAATGACTTGATGAGATTAGAAGTAAACTTTAAGGGAGGATTGTTGGCTTCTATGGAGGCAAGAT
CTTCCTTTCTTGACAAGATTAAGGGAAGATAGTCTGATGATGAGAAACTGTGCCGAATTCAAGATAAGGTATTGCGAGGAGAGGCTAAGGAAGCACAAAT
CGATGAGGAAGGTGTTTTGAGAATCAAGGGAAGGGTATGTGTACCCCGCGTCGATGATTTGATCAACACTATTCTGACAGAAGCTCATAGTTCAAGGTAT
TCTATACATCCGGGTGCAACCAAGATGTATCGTGACCTAAAGCAACACTTTTGGTGGAGTAGAATGAAGCGTGATATTGTTGACTTTATTGCCAAGTGTC
CAAACTGTCAACAAGTAAAGTATGAACACCAGAGGCCCGGAGGAACACTTCAGAGAATGCCCATTCCTGAATGGAAGTGGGAGAGAATTGCAATGGACTT
TGTGGTTGGTCTTCCCAAGACATTGGGAAAGTTTGATTCTATTTGGGTAATTGTTGATAGGTTAACTAATTCTACTCACTTCATTCCGGTCAAGGTGACT
TACAATGCAGAGAAGTTAGCCAAACTTTACATCTCGGAAGTGGTGCGATTGCATGGGGTTCCACTATCCATCATATCAGATAGAGGTACGCAGTTTACTT
CTAAGTTTTGGAAAACATTGCATGCGGAATTGGGTACTAGGTTGGACCTTAGTACTGCGTTCCATCCTCAGATCGATGGCCAGTCTGAGCGAACAATTCC
AGTGTTGGAGGATATGGCTTCGTGCGTGGTTGATAAAATTTGGTGGCCATTGGGATAGCTTCTACCCTTTACGGAATTTTCCTACATAATAGCCTTCCCT
CAAGCTTGAATTGGCCCCTTTGGGCCTTAATGGGAGGAGGTT
>LE_HBa0026J12_SP6_136763 (trimmed for quality and cloning vector)
AGGTTCAGACTCTAGCTAATGACTTGATGAGATTAGAAGTAAACTTTAAGGGAGGATTGTTGGCTTCTATGGAGGCAAGATCTTCCTTTCTTGACAAGAT
TAAGGGAAGATAGTCTGATGATGAGAAACTGTGCCGAATTCAAGATAAGGTATTGCGAGGAGAGGCTAAGGAAGCACAAATCGATGAGGAAGGTGTTTTG
AGAATCAAGGGAAGGGTATGTGTACCCCGCGTCGATGATTTGATCAACACTATTCTGACAGAAGCTCATAGTTCAAGGTATTCTATACATCCGGGTGCAA
CCAAGATGTATCGTGACCTAAAGCAACACTTTTGGTGGAGTAGAATGAAGCGTGATATTGTTGACTTTATTGCCAAGTGTCCAAACTGTCAACAAGTAAA
GTATGAACACCAGAGGCCCGGAGGAACACTTCAGAGAATGCCCATTCCTGAATGGAAGTGGGAGAGAATTGCAATGGACTTTGTGGTTGGTCTTCCCAAG
ACATTGGGAAAGTTTGATTCTATTTGGGTAATTGTTGATAGGTTAACTAATTCTACTCACTTCATTCCGGTCAAGGTGACTTACAATGCAGAGAAGTTAG
CCAAACTTTACATCTCGGAAGTGGTGCGATTGCATGGGGTTCCACTATCCATCATATCAGATAGAGGTACGCAGTTTACTTCTAAGTTTTGGAAAACATT
GCATGCGGAATTGGGTACTAGGTT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.971365
Expected error %
0.1303
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 320 E Value 2e-86 Identity 20.60% Align. Length 719bp (99.31%) Frame 1
putative polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38745.1| Score 320 E Value 2e-86 Identity 20.60% Align. Length 719bp (99.31%) Frame 1
putative polyprotein, 3'-partial [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0026J12
Clone
Clone name
hba-26j12
LE_HBa0026J12
C06HBa0026J12
P026J12
Clone type
BAC
Contamination
none
Estimated length
99,117
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found