Clone Read LE_HBa0024G18_SP6_135095

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0024G18_SP6_135095
Primer
SP6
ID from Seq. Facility
LE_HBa_024_G18-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
710 trimmed for vector and quality, 978 raw
Genbank Accession
DU047038
Sequence
>LE_HBa0024G18_SP6_135095 (raw untrimmed)
TTTTGGCCACGGCCATTGGGAGGGGCTGAGTCGATGGCTGACAAAGCTGTTTCCGTTTATAGTGCTCTGGTAGCTGAAGTTGAGAAAGATGTAACTGCTA
GTTTTGAGAAGGAACTCTTATTGGAAAGGGAAAAGATTGAAGCCGTGGAGAAGTTAGCTGAGGAAGCAAGAAGAGAGTTGGAGAGTTTGAGAGCTCAGCG
GGAGGAAGAGAATTTAGCATTAATGAAGGAACGTGCTGTTGTTGATTCAGAAATGGAAATTCTTTCCAGATTAAGACGTGATGTAGAGGAGCAATTACAG
ACCCTTGTGAGCGACAAATTAGAGATCACCTATGACAAAGAGAGGATTGAAAAGCTTAGGAAAGATGCAGAATTTGAAACCCAAGAGATAGCACGTTTGC
AGTATGAGCTGGAGGTTGAGAGAAAAGCATTATCCTTGGCTAGGTAAGAAATGTATCATCTTAAATGTTTTTCTAGCTCGATCATAATTACAATGTTGAT
TCATCACATTCAAATGGCTCACCAAGGAGGATTTAACCTGCCTACTAGTTAGTGACAATCCCACAGTTCAATGGTCGTTTGTTATCATTCACTGAAAATT
AGTTCAATATTGATATTTGAGTATTCTGAGGAATCTGTGACGATATCATGCATCATTAGAGTTGGTTACTAGTGCTACTCTGGCTTAAGTAATTCCTCGT
CTCTGTGAAGGGGCTAAGAAAATCTATCCCATTTTCTTCTTTTGATTATTTTGAAGTGTGTTCCTTGTCTGGCCCAGTGTTATTCAAAGGCACGCTTAAC
CCCAAAAGTGTGGCTCAAAAAATGTTGAGCGCTTCGCCTCACTTTATTACCCTTTTCGTGTCATCATCGAGGTTCTAAGGCAACTTTTCCTTGCCAATGA
GCCCCTTTGAAGAATGAACCTAAACATTTGAGGTTCCCTTTATCAGATTCTTTTTTCTTGGGCAAAATTTGCATTAAA
>LE_HBa0024G18_SP6_135095 (trimmed for quality and cloning vector)
TGAGTCGATGGCTGACAAAGCTGTTTCCGTTTATAGTGCTCTGGTAGCTGAAGTTGAGAAAGATGTAACTGCTAGTTTTGAGAAGGAACTCTTATTGGAA
AGGGAAAAGATTGAAGCCGTGGAGAAGTTAGCTGAGGAAGCAAGAAGAGAGTTGGAGAGTTTGAGAGCTCAGCGGGAGGAAGAGAATTTAGCATTAATGA
AGGAACGTGCTGTTGTTGATTCAGAAATGGAAATTCTTTCCAGATTAAGACGTGATGTAGAGGAGCAATTACAGACCCTTGTGAGCGACAAATTAGAGAT
CACCTATGACAAAGAGAGGATTGAAAAGCTTAGGAAAGATGCAGAATTTGAAACCCAAGAGATAGCACGTTTGCAGTATGAGCTGGAGGTTGAGAGAAAA
GCATTATCCTTGGCTAGGTAAGAAATGTATCATCTTAAATGTTTTTCTAGCTCGATCATAATTACAATGTTGATTCATCACATTCAAATGGCTCACCAAG
GAGGATTTAACCTGCCTACTAGTTAGTGACAATCCCACAGTTCAATGGTCGTTTGTTATCATTCACTGAAAATTAGTTCAATATTGATATTTGAGTATTC
TGAGGAATCTGTGACGATATCATGCATCATTAGAGTTGGTTACTAGTGCTACTCTGGCTTAAGTAATTCCTCGTCTCTGTGAAGGGGCTAAGAAAATCTA
TCCCATTTTC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.958306
Expected error %
0.1962
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g23890.1 Score 136 E Value 1e-32 Identity 18.20% Align. Length 416bp (58.59%) Frame 3
68418.m02806 expressed protein weak similarity to SP|P12957 Caldesmon (CDM) {Gallus gallus}
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g52410.1 Score 108 E Value 4e-24 Identity 14.10% Align. Length 416bp (58.59%) Frame 3
68418.m06503 expressed protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAB10062.1| Score 136 E Value 5e-31 Identity 18.20% Align. Length 416bp (58.59%) Frame 3
unnamed protein product [Arabidopsis thaliana] ref|NP_197777.1| expressed protein [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAN31916.1| Score 135 E Value 1e-30 Identity 18.00% Align. Length 416bp (58.59%) Frame 3
unknown protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0024G18
Clone
Clone name
hba-24g18
LE_HBa0024G18
P024G18
Clone type
BAC
Contamination
none
Estimated length
104,445
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found