Clone Read LE_HBa0167P17_T7_13425

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0167P17_T7_13425
Primer
T7
ID from Seq. Facility
LE_HBa_167_P17-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
700 trimmed for vector and quality, 799 raw
Genbank Accession
DU032026
Sequence
>LE_HBa0167P17_T7_13425 (raw untrimmed)
CCTCGGTCCCGGGGGGTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTATGAGACTAATTTATCCAGACCATTAGAGGACTCACAAGAATGGGAAAGAA
AACTACAGGCAGCCCAGGAGAAGTTGGCTGATGGCCAAAGATTGCTTAACCAAAGAGAGAAGCGAGCCAATGACACTGATAGAATTTTGAGGCAAAAGCA
GAATGACCTTGAAGATGAGCAGAGGAAAATTGTCACCGCTAACTCAGTTTTGAGGAAGAAAGAAGATGATATGGGCAGCAAGATAGAAGATCTTACTCAC
AAGGAGAAGGCAAGTTTCCTTTGAATTCTTCACGTGCCTAGCTGGAAAAGTGTAGTATGATATTTACCTTACAAGTTTTCCACTTGATACAGGAACTTGA
AGATGCGAGAAAGAGTTTGGGGATAAAAGAGAGGGAGTTGCTAGATCTACAGGAGAAACTAAATATTAAAGAGAGAGTGAGTTCCTTTGTCCTTCCCTTT
TCTGGGTTTGTCTAGTACAGATGGTTGAAAGTTAAGGCATTATTGATGAAGGTGGCCTCTGTTTTCTTGAGTTCACTTTTGTCTGGCAATTATTTATTAC
AACGAATTTATCAGTAATTAACTTCTTTTTTTTCTTGAACTTTTTAGATTGAAATTTAGCAAATTGTTTTTGTTGAAAAGTTTCCTTTGAACCTGTTCCA
ATTCTTTGAGTTGCCCTGTAAAAGCTTTCCTCTGCCTTACAGTTTCTGTGGGTCCATTATTTCTGGTTTCCCCCCTTCTTTTACCCCTTCCAAATCTTT
>LE_HBa0167P17_T7_13425 (trimmed for quality and cloning vector)
AGCTTATGAGACTAATTTATCCAGACCATTAGAGGACTCACAAGAATGGGAAAGAAAACTACAGGCAGCCCAGGAGAAGTTGGCTGATGGCCAAAGATTG
CTTAACCAAAGAGAGAAGCGAGCCAATGACACTGATAGAATTTTGAGGCAAAAGCAGAATGACCTTGAAGATGAGCAGAGGAAAATTGTCACCGCTAACT
CAGTTTTGAGGAAGAAAGAAGATGATATGGGCAGCAAGATAGAAGATCTTACTCACAAGGAGAAGGCAAGTTTCCTTTGAATTCTTCACGTGCCTAGCTG
GAAAAGTGTAGTATGATATTTACCTTACAAGTTTTCCACTTGATACAGGAACTTGAAGATGCGAGAAAGAGTTTGGGGATAAAAGAGAGGGAGTTGCTAG
ATCTACAGGAGAAACTAAATATTAAAGAGAGAGTGAGTTCCTTTGTCCTTCCCTTTTCTGGGTTTGTCTAGTACAGATGGTTGAAAGTTAAGGCATTATT
GATGAAGGTGGCCTCTGTTTTCTTGAGTTCACTTTTGTCTGGCAATTATTTATTACAACGAATTTATCAGTAATTAACTTCTTTTTTTTCTTGAACTTTT
TAGATTGAAATTTAGCAAATTGTTTTTGTTGAAAAGTTTCCTTTGAACCTGTTCCAATTCTTTGAGTTGCCCTGTAAAAGCTTTCCTCTGCCTTACAGTT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.952066
Expected error %
0.777032
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g67230.1 Score 90 E Value 3e-21 Identity 47.70% Align. Length 436bp (62.29%) Frame 3
68414.m07652 expressed protein
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g13220.1 Score 70 E Value 1e-12 Identity 12.10% Align. Length 263bp (37.57%) Frame 3
68414.m01533 nuclear matrix constituent protein-related similar to nuclear matrix constituent protein 1 (NMCP1) [Daucus carota] GI:2190187
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
pir||T14321 Score 94 E Value 3e-20 Identity 53.40% Align. Length 430bp (61.43%) Frame 3
nuclear matrix constituent protein 1 - carrot dbj|BAA20407.1| nuclear matrix constituent protein 1 (NMCP1) [Daucus carota]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAG00257.1| Score 90 E Value 7e-20 Identity 47.70% Align. Length 457bp (65.29%) Frame 3
F1N21.5 [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0167P17
Clone
Clone name
hba-167p17
LE_HBa0167P17
C02HBa0167P17
P167P17
Clone type
BAC
Contamination
none
Estimated length
101,005
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found