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Clone Read LE_HBa0023A20_T7_134044

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0023A20_T7_134044
Primer
T7
ID from Seq. Facility
LE_HBa_023_A20-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
743 trimmed for vector and quality, 909 raw
Sequence
>LE_HBa0023A20_T7_134044 (raw untrimmed)
CCGGGGTACCGGGGGATCTTCTAGAGTCGACCTGCAGGCATGCAAGCTTAGGGAGATTGGATTTATAGTCTACTTTTTAGGTAAGNNTNTGGATGNTTGG
NTNAAGGAGATGCCCCTTTGGGGTTAATNGNTTTANNTGGNTNGAGTAGTAGCTTGTTNANAAATNAAAGATATTANTTATATGATGNAGCCCGNTGGGA
TTNTTANNTTTTTTTTTTANTANGTTNAGTTTNTGTTTTGTTTTATCCCACTTAGGCTGAAAGACCATTCATGGTCACTACCAGACTCTTAATGTTTCTT
TTGTATTGATGATATCACCTTTGTCATTTACTTGTCTTTGTCAGAGGATTTTGTTTGTTCGATTCAAAAATCTTGCTACCAAACATTTTGGGACAAGTTA
TAATATATGATATTCATAACTTTTTAGTAGTGAGAGAAGAAGATAAATCTTAAATAATGTTCAGATAGAGAAATATGTGCTATGCATTTTTCTGAAAGAA
AAATAAAAGAAGTAATTTGCTTAACAAGTTTTGACATAGCGCATATTGGTTTAGCAGTTAGAACTCAACCAAACTTATTTTATCTCTCCGTTCATTTTTA
CTTGTCACTTTTTGACTTACATATTTAATTAAAAAGCAATTATTAATGATATAAGTAGTTTACCCCATTATCTCTATTCATTACTTTTTCTATCCATATT
TACTTGTTCAAATTTTTATTTGGTAACATTATTTATTCATTTTTTATTTGAAAAAAATAATTGACATAAGGACTTTACTAATTTTGCCCTTATTAAATTT
AAAAATTTTTCAAAAATCAATTTTACTCATTTAAAAAAGGTTTCTATCCTTTTTATCAAAAAATAAAAAACTCCTCTAAAAAAAAATTTAAAGGAAATAT
AATAAAAAA
>LE_HBa0023A20_T7_134044 (trimmed for quality and cloning vector)
AGCTTAGGGAGATTGGATTTATAGTCTACTTTTTAGGTAAGNNTNTGGATGNTTGGNTNAAGGAGATGCCCCTTTGGGGTTAATNGNTTTANNTGGNTNG
AGTAGTAGCTTGTTNANAAATNAAAGATATTANTTATATGATGNAGCCCGNTGGGATTNTTANNTTTTTTTTTTANTANGTTNAGTTTNTGTTTTGTTTT
ATCCCACTTAGGCTGAAAGACCATTCATGGTCACTACCAGACTCTTAATGTTTCTTTTGTATTGATGATATCACCTTTGTCATTTACTTGTCTTTGTCAG
AGGATTTTGTTTGTTCGATTCAAAAATCTTGCTACCAAACATTTTGGGACAAGTTATAATATATGATATTCATAACTTTTTAGTAGTGAGAGAAGAAGAT
AAATCTTAAATAATGTTCAGATAGAGAAATATGTGCTATGCATTTTTCTGAAAGAAAAATAAAAGAAGTAATTTGCTTAACAAGTTTTGACATAGCGCAT
ATTGGTTTAGCAGTTAGAACTCAACCAAACTTATTTTATCTCTCCGTTCATTTTTACTTGTCACTTTTTGACTTACATATTTAATTAAAAAGCAATTATT
AATGATATAAGTAGTTTACCCCATTATCTCTATTCATTACTTTTTCTATCCATATTTACTTGTTCAAATTTTTATTTGGTAACATTATTTATTCATTTTT
TATTTGAAAAAAATAATTGACATAAGGACTTTACTAATTTTGC

This is probably not a useful sequence.

Problems:
  • High predicted error rate
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.975847
Expected error %
7.3808
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0023A20
Clone
Clone name
hba-23a20
LE_HBa0023A20
C02HBa0023A20
P023A20
Clone type
BAC
Contamination
none
Estimated length
107,777
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found