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Clone Read LE_HBa0020P05_SP6_133197

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0020P05_SP6_133197
Primer
SP6
ID from Seq. Facility
LE_HBa_020_P05-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
589 trimmed for vector and quality, 953 raw
Genbank Accession
DU048077
Sequence
>LE_HBa0020P05_SP6_133197 (raw untrimmed)
CCCCCCACCACCCAACGTAAAACTGAACAAAAGTCAAGAGGTAAATACTTACTAGATTCCTATTCTTTCGTCATCAATGGTATTTTCCTCACACAAGATT
TACTAGTGTCTTTCCTAAAACCAGGTGGACAAACACAAGAAGTTTGAGTTGTAGAAGTATCATACATGCATATAGAGTTTGTACCACAAGTACCATGTAT
TGTACATAATTGATTAACAGCTTGCCAAACAATTGTCCAATTTTTAGCACTAATATCAAAACTATAGATTCTCATATTCCCATCTTCATCCAATTTCATC
CTTCTCAGTTTCCCTTTCTCCCCGAAATCCGACGACAAAAATCTTCCATTAACTTGAGTAACTTCCCCTGTTTCCTCCAACCTCTGAAGGGCATTTTGGG
AAAAAGTGAAATAACTATCGTTTCCATTGAAGTAAAGGGTATTCGAATCAAAATGGAATTTTCCATTACCGGAAGTTAAATTTGTTCCGGTGATGTTCTG
GGTCGGAAGATAAGTATCAGTTGGGTTCAAAAAACTGTTCCAGTTTCCATAAACCAAGTTTCCATCTTCTTGTAGGAAAAGAACAGAGGAGGTGTTTCGA
ATACTTGAAGGCCATAAATTTGGAGCTGAAGAAGATGAAGATGGGGTTAATTTGAGTTCACCGGAGGAAAAAATGAAAAGGGGTAGTTGAGGAATTAAAT
GGGAAATTTGGGTTAGCTGACCAAACAACGGTTCTGATTGGGATTTTGTAATCCCAAATGGAGAAATTGATTCGATTTTCGGGAGATTGAAGAAACCTCC
CAACAAAAGGTGATTTGGGTGAAATAGGGATTTGGTTTTGGGTGGATTTAAGGCAGGGAATTTGAAATCCATTTACTGAACGTTTCCTGGGACAACGGAA
AAGGGCTCCGAGAAAACTACACCAGCGCTCTCTATCTTTCTTCTCATCCCCTC
>LE_HBa0020P05_SP6_133197 (trimmed for quality and cloning vector)
CAAGAGGTAAATACTTACTAGATTCCTATTCTTTCGTCATCAATGGTATTTTCCTCACACAAGATTTACTAGTGTCTTTCCTAAAACCAGGTGGACAAAC
ACAAGAAGTTTGAGTTGTAGAAGTATCATACATGCATATAGAGTTTGTACCACAAGTACCATGTATTGTACATAATTGATTAACAGCTTGCCAAACAATT
GTCCAATTTTTAGCACTAATATCAAAACTATAGATTCTCATATTCCCATCTTCATCCAATTTCATCCTTCTCAGTTTCCCTTTCTCCCCGAAATCCGACG
ACAAAAATCTTCCATTAACTTGAGTAACTTCCCCTGTTTCCTCCAACCTCTGAAGGGCATTTTGGGAAAAAGTGAAATAACTATCGTTTCCATTGAAGTA
AAGGGTATTCGAATCAAAATGGAATTTTCCATTACCGGAAGTTAAATTTGTTCCGGTGATGTTCTGGGTCGGAAGATAAGTATCAGTTGGGTTCAAAAAA
CTGTTCCAGTTTCCATAAACCAAGTTTCCATCTTCTTGTAGGAAAAGAACAGAGGAGGTGTTTCGAATACTTGAAGGCCATAAATTTGG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.954534
Expected error %
0.2517
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g34300.1 Score 79 E Value 1e-15 Identity 12.20% Align. Length 530bp (89.98%) Frame 3
68414.m04256 lectin protein kinase family protein contains Pfam domains, PF01453: Lectin (probable mannose binding) and PF00069: Protein kinase domain
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g41890.1 Score 74 E Value 6e-14 Identity 12.80% Align. Length 491bp (83.36%) Frame 3
68415.m05181 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein contains Pfam profiles: PF01453 lectin (probable mannose binding), PF00024 PAN domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAP51745.1| Score 120 E Value 2e-26 Identity 13.50% Align. Length 503bp (85.40%) Frame 3
putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] ref|NP_919458.1| putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] gb|AAM08636.1| Putative receptor-like protein kinase [Oryza sativa] gb|AAL73562.1| Putative receptor-like protein kinase [Oryza sativa]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_916844.1| Score 112 E Value 8e-24 Identity 14.70% Align. Length 524bp (88.96%) Frame 3
putative receptor protein kinase [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0020P05
Clone
Clone name
hba-20p5
LE_HBa0020P05
C03HBa0020P05
P020P05
Clone type
BAC
Contamination
none
Estimated length
51,572
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found