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Clone Read LE_HBa0018A13_T7_130958

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0018A13_T7_130958
Primer
T7
ID from Seq. Facility
LE_HBa_018_A13-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
758 trimmed for vector and quality, 923 raw
Sequence
>LE_HBa0018A13_T7_130958 (raw untrimmed)
GGGGACCCGCGGGGACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTGAGAAACTAGGGGTCTCAAGCTTTGTTGAATTTTGTGTCTTGGGGCTTGGAG
AACTTGGCGTTTCATGCTTTGTGAAAGTAGGGGTCTCAGACTTTGGGGAACTTGGAGTCTCGGGTTTTGTAAAAATGGGAGTCTCATATTTTGGGGAACT
TGATGTCTCAGGCTTTGAGAAACTAGGAGTCTCGAGCTTTGGGAAACTAGGGGTTTCGGGCTTTGAGAAACTAGGGGTCTCAGGCTTCGGAGAACTTGGA
ATTTCAAGCTTTGAAAAAGAAGGAGTATCTAACTTTGGGTAAATCGGAGTCTCAGGCTTTGAGAAAGTAGGAGTCTCAGGTTTTGAGAAACTAGGGGCAT
TAGGCTTTGAAAAACTAGGGGTCTCGAGCTTTTGAGAATCAGAGGTCTCTGGCTTTAGGGAATTAGGTTTCTCAGGCTTTGAAAAACTGGGAATCATGGG
TTTTGTAGAACTAGGGGTTTCGGGTTTTGAAAAACTTGGGATCTCAGGTTTTGAGAAAGTAGGAGTCTTAGGCTTTGAGAAAGTAGGGGTCTCGGGCTTT
GGGGAAGTAGGAGTCTTGGTCATTGAAAAACTAGGGTTCTCAGGTTTTGAGAAGGTAGGATTCTCAGACTTTGGTGAACCAGGGATTTTGGGCTCGGAGA
AACTTGGAGTCTTGGGCTTTGAGAAAATAAGAGTTTCAGGCTTGGAAAAAGTAGAAGTCTCCGGCCTTTAGAGAACTAGGGGGTATCAAGTTTTGGAAAA
ACTAGGAGTCTCAGGGTTTTGAGAAACTAGGGATTTCCGGGTTTTGAAAACCCTAGGGGGTCCTCGGGGCTTTTAAAAAAAGTTAGGGGGTTCTTTAGGT
TTTTTTGGAAAAAACCCGGGGGT
>LE_HBa0018A13_T7_130958 (trimmed for quality and cloning vector)
AGCTTTGAGAAACTAGGGGTCTCAAGCTTTGTTGAATTTTGTGTCTTGGGGCTTGGAGAACTTGGCGTTTCATGCTTTGTGAAAGTAGGGGTCTCAGACT
TTGGGGAACTTGGAGTCTCGGGTTTTGTAAAAATGGGAGTCTCATATTTTGGGGAACTTGATGTCTCAGGCTTTGAGAAACTAGGAGTCTCGAGCTTTGG
GAAACTAGGGGTTTCGGGCTTTGAGAAACTAGGGGTCTCAGGCTTCGGAGAACTTGGAATTTCAAGCTTTGAAAAAGAAGGAGTATCTAACTTTGGGTAA
ATCGGAGTCTCAGGCTTTGAGAAAGTAGGAGTCTCAGGTTTTGAGAAACTAGGGGCATTAGGCTTTGAAAAACTAGGGGTCTCGAGCTTTTGAGAATCAG
AGGTCTCTGGCTTTAGGGAATTAGGTTTCTCAGGCTTTGAAAAACTGGGAATCATGGGTTTTGTAGAACTAGGGGTTTCGGGTTTTGAAAAACTTGGGAT
CTCAGGTTTTGAGAAAGTAGGAGTCTTAGGCTTTGAGAAAGTAGGGGTCTCGGGCTTTGGGGAAGTAGGAGTCTTGGTCATTGAAAAACTAGGGTTCTCA
GGTTTTGAGAAGGTAGGATTCTCAGACTTTGGTGAACCAGGGATTTTGGGCTCGGAGAAACTTGGAGTCTTGGGCTTTGAGAAAATAAGAGTTTCAGGCT
TGGAAAAAGTAGAAGTCTCCGGCCTTTAGAGAACTAGGGGGTATCAAGTTTTGGAAAA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.860445
Expected error %
0.8438
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g09530.1 Score 83 E Value 1e-16 Identity 35.70% Align. Length 587bp (77.44%) Frame 1
68418.m01103 hydroxyproline-rich glycoprotein family protein contains proline-rich extensin domains, INTERPRO:IPR002965
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g27380.1 Score 77 E Value 1e-14 Identity 35.00% Align. Length 608bp (80.21%) Frame 1
68415.m03302 proline-rich family protein contains proline-rich extensin domains, INTERPRO:IPR002965
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|EAA76820.1| Score 93 E Value 9e-18 Identity 28.80% Align. Length 707bp (93.27%) Frame 1
hypothetical protein FG07651.1 [Gibberella zeae PH-1] ref|XP_387827.1| hypothetical protein FG07651.1 [Gibberella zeae PH-1]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAE75525.1| Score 91 E Value 2e-17 Identity 28.50% Align. Length 716bp (94.46%) Frame 1
Hypothetical protein CBG23547 [Caenorhabditis briggsae]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0018A13
Clone
Clone name
hba-18a13
LE_HBa0018A13
P018A13
Clone type
BAC
Contamination
none
Estimated length
105,401
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found