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Clone Read LE_HBa0018A13_SP6_130957

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0018A13_SP6_130957
Primer
SP6
ID from Seq. Facility
LE_HBa_018_A13-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
626 trimmed for vector and quality, 882 raw
Sequence
>LE_HBa0018A13_SP6_130957 (raw untrimmed)
GGCCCCGGAAAGGCATAGGGGGATNNGCCATTTTCACTTCGAGTTTCGCGCACTGTTTTTTTGGCAGCAAAAGCAATTTTACTTTGCGGAAGTGTAGCTG
AGGGTGGGCAATTGGCGGAGAACACCCTGAAACGTGTTGGTGCCAATCTACTCACTGGAAAGCTGGTTGAGGCTATGAAAGATCTGTTGGTTGTGGCAAC
TGTGTCAGCCAGAGTTCATGGTTCATGGTATGTAGAGGTGCTTAAAAATATGAGAGCTTTATAGCACACACACTTGTTCAAGAAATTGTCAGCTTGCATT
CTTACATGAATGTATAGGACGGGAAAGTTGATCTTACTATATGCAATATAATGTATTATGAAAGAAGTATTGTTTCTAAATATAATAATAAAAATCGTAG
CCAAGAACACGCCAATTATATGAGCCTATATTTCAAATAATTTCAAAGAATGACCTAAAATGCCTTCAAACTATAAGATGTGATATAGTATTGCCCTCCG
TCTAGTGTGAGCGGCTTAAATAGGGGTGTTTTTGAGCCAAATTTGTCGGATGAAAATATGGACAGAGATTAGTTTGTATCAATTCAAATAGGTGCGAATC
AGTTTAAGCTCTTCTCTGATGAAACAATTAATTCACCTTATTAAAAAAAAAACATTCAATAAATAAGCAAAACGAGGATATTTAATCCTAACTTTAATCG
TAGAGTATTTTCATAAACAAGATTCAAATGAGTTCTTTAAAAAAAAGATACTTTTATTAAGAAAAAAATATTTTTGACCATTAACATATGGGGGATTTTG
ACCATATTTATTTAAGCTGCAAAAAAAGTTTTAAACTTAAATATTACTTTGAGGGCCTTTTTGGTTTAATTTCTCATGGTTT
>LE_HBa0018A13_SP6_130957 (trimmed for quality and cloning vector)
AGTTTCGCGCACTGTTTTTTTGGCAGCAAAAGCAATTTTACTTTGCGGAAGTGTAGCTGAGGGTGGGCAATTGGCGGAGAACACCCTGAAACGTGTTGGT
GCCAATCTACTCACTGGAAAGCTGGTTGAGGCTATGAAAGATCTGTTGGTTGTGGCAACTGTGTCAGCCAGAGTTCATGGTTCATGGTATGTAGAGGTGC
TTAAAAATATGAGAGCTTTATAGCACACACACTTGTTCAAGAAATTGTCAGCTTGCATTCTTACATGAATGTATAGGACGGGAAAGTTGATCTTACTATA
TGCAATATAATGTATTATGAAAGAAGTATTGTTTCTAAATATAATAATAAAAATCGTAGCCAAGAACACGCCAATTATATGAGCCTATATTTCAAATAAT
TTCAAAGAATGACCTAAAATGCCTTCAAACTATAAGATGTGATATAGTATTGCCCTCCGTCTAGTGTGAGCGGCTTAAATAGGGGTGTTTTTGAGCCAAA
TTTGTCGGATGAAAATATGGACAGAGATTAGTTTGTATCAATTCAAATAGGTGCGAATCAGTTTAAGCTCTTCTCTGATGAAACAATTAATTCACCTTAT
TAAAAAAAAAACATTCAATAAATAAG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.952613
Expected error %
0.0103
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g09150.1 Score 64 E Value 9e-11 Identity 15.20% Align. Length 203bp (32.43%) Frame 3
68417.m01515 T-complex protein 11 contains Pfam PF05794: T-complex protein 11
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0018A13
Clone
Clone name
hba-18a13
LE_HBa0018A13
P018A13
Clone type
BAC
Contamination
none
Estimated length
105,401
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found