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Clone Read LE_HBa0015O12_T7_130092

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0015O12_T7_130092
Primer
T7
ID from Seq. Facility
LE_HBa_015_O12-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
814 trimmed for vector and quality, 959 raw
Genbank Accession
DU051394
Sequence
>LE_HBa0015O12_T7_130092 (raw untrimmed)
TTGAATGGGTCCCGGGGGAACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTGAAGCCTAACTAAAACAGCCACCGTTTAAAGGATTGTTTAGCTCTAA
AACCTTATCTTCTCCCACCTTTTAAGTCTTCCTCAATTTGTTGCTCAATCATGTAATCTTCTTCTTCTTCACTCAAATCTGAGTTACTAACCCACTCCAT
CACGAGAATCTCCCCCGTATATCATCTTTTTTTTCATGTTTGAACTTGAATGCAAAATCAAATGCTTACCACTCCTTTCAATACCAATTTTGGGTTGATT
AAGTTTTCTATGTGTTTTTGAGAAAAAAAAGAGTAATCGACAAAATTGCGTGAGATTTTTGAAGAACAAAACAGAGGATCAAGGTGAGTATTCACTGCTC
TGAAGTGGGAAGAGAGAACTTAGAGTATTTTTGGTTAGTTTGGGTATATCATTAAGTGTTAGTAATGGTTGAGTTGGGGGCTATTTGGGCAGGTCTTTTA
AATTTGGGTCGTGGGTTTAGGATTTGGTGAATAATAAGGGTATTTGCATAGGATGATGACACATGGCATTCCGTTAGGGTGAAGGGCATAAATGTTCCAC
TTTTTGAACGGCAGGGGTACTAGCGTCTCCATAGTATAACGAAGGGTATTCACATACCATTTTCGATAGTTCGAGGGTATATTTGCCTTTTTCCGTAGAA
AGACTGGATTTGGGATCAGAGATACACTTCTTCAACATAGAAACATGGAAAAACGGATGAACCGAAGCCAATTCACCAGGAAGTGTCAATTCATAGGCAA
CCTTACCAACCCTTTGCAAGATTTTATAGGGACCCACATACCAGGACTCATTTCCCTTTCTTTCAACTCTAACCACTTCTTCATTGGAAAAATTTTAATA
CACCTATCGCCTTCTTCAACTTCAAATCCTTCTCTATGATCGCATAAACTTTGGCTACA
>LE_HBa0015O12_T7_130092 (trimmed for quality and cloning vector)
AGCTTTGAAGCCTAACTAAAACAGCCACCGTTTAAAGGATTGTTTAGCTCTAAAACCTTATCTTCTCCCACCTTTTAAGTCTTCCTCAATTTGTTGCTCA
ATCATGTAATCTTCTTCTTCTTCACTCAAATCTGAGTTACTAACCCACTCCATCACGAGAATCTCCCCCGTATATCATCTTTTTTTTCATGTTTGAACTT
GAATGCAAAATCAAATGCTTACCACTCCTTTCAATACCAATTTTGGGTTGATTAAGTTTTCTATGTGTTTTTGAGAAAAAAAAGAGTAATCGACAAAATT
GCGTGAGATTTTTGAAGAACAAAACAGAGGATCAAGGTGAGTATTCACTGCTCTGAAGTGGGAAGAGAGAACTTAGAGTATTTTTGGTTAGTTTGGGTAT
ATCATTAAGTGTTAGTAATGGTTGAGTTGGGGGCTATTTGGGCAGGTCTTTTAAATTTGGGTCGTGGGTTTAGGATTTGGTGAATAATAAGGGTATTTGC
ATAGGATGATGACACATGGCATTCCGTTAGGGTGAAGGGCATAAATGTTCCACTTTTTGAACGGCAGGGGTACTAGCGTCTCCATAGTATAACGAAGGGT
ATTCACATACCATTTTCGATAGTTCGAGGGTATATTTGCCTTTTTCCGTAGAAAGACTGGATTTGGGATCAGAGATACACTTCTTCAACATAGAAACATG
GAAAAACGGATGAACCGAAGCCAATTCACCAGGAAGTGTCAATTCATAGGCAACCTTACCAACCCTTTGCAAGATTTTATAGGGACCCACATACCAGGAC
TCATTTCCCTTTCT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.970159
Expected error %
0.779
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 82 E Value 2e-14 Identity 22.00% Align. Length 176bp (21.62%) Frame 3
putative retrotransposon protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38792.1| Score 79 E Value 1e-13 Identity 20.90% Align. Length 176bp (21.62%) Frame 3
putative gag-pol polyprotein [Solanum demissum] gb|AAT38791.1| putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0015O12
Clone
Clone name
hba-15o12
LE_HBa0015O12
C12HBa0015O12
P015O12
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found