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Clone Read LE_HBa0015O12_SP6_130091

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0015O12_SP6_130091
Primer
SP6
ID from Seq. Facility
LE_HBa_015_O12-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
783 trimmed for vector and quality, 961 raw
Genbank Accession
DU051393
Sequence
>LE_HBa0015O12_SP6_130091 (raw untrimmed)
GTGGTTATTTAGTGAGATCGAAAATACCCAGTAGAAGGATACTGCTTCAAGTATTTAACCATTTGGTAAGCTGCCTTCAAGTGTGGTTCTCTAGGAGTTT
CCATAAACTGACTGAGATAATGTACACTATAAGATATATCTATCTTTGTAGTTGTGAGAAAATTAAGTTTTCCTACTAACTTTCTATAAAGAGTTGGATC
AGTCAACAACTTGCCATCAGTGGCCTTCAATTTTTCAGTACAATCAAATGGTGATGAAACAATCTTCTAATTCAAAAAATCAAATTCCTTCAAAAGATTC
GTGATGAACTTCCTTTGTGAAATCAAAAGACATCATGCCTATACAGTATCTCCAACCCCAGGAAATAAGTAATTTGCCCAAATCTTTTATTTTGAACTGA
TCATGCAGAAAAGACATCAAGGATTCAATTTCTTCTAGGTCAGTTCCAGTCAAGATTACATCATCAACATATACTGCAACAAAAACGAAAGAATAGTATC
TTGTTCTTATATAAAACAGTGAATAGTCACTGTTTGAGTGTGTGTATCCTCTATAACAAAGAATACTTGCCAACTTGCCATACCACTGTCTACTAGACTG
TTTCAAGCCATACAATGATTTTTTCAATTTACACACCATGTTAATACCATCTACACTAAGACCTTGTGGTAATGTCATATATACCATCTAGACTAAGACC
TTGTGGTAATGTCATAAAAACTTCCTCTTTCGAATCACCATGAAGGAAGGCATTATTGACATTTAGTTGATACAAGTTCCAGCCTTTCTTAACAGCCAAA
GTGATTAATGTCCTAACAATGGTAATCTTAACCACAGGAGAAAAGTCTCAGCGTAGTCTATTCAAGCTTATTGAGTGTATCCTTTGACTACCAACCTTGC
CCTGAATCTTTCCACCCTCTCATCTGCTTTATGGTATTTCTTGTCACCCCTGGACACCCAT
>LE_HBa0015O12_SP6_130091 (trimmed for quality and cloning vector)
AAATACCCAGTAGAAGGATACTGCTTCAAGTATTTAACCATTTGGTAAGCTGCCTTCAAGTGTGGTTCTCTAGGAGTTTCCATAAACTGACTGAGATAAT
GTACACTATAAGATATATCTATCTTTGTAGTTGTGAGAAAATTAAGTTTTCCTACTAACTTTCTATAAAGAGTTGGATCAGTCAACAACTTGCCATCAGT
GGCCTTCAATTTTTCAGTACAATCAAATGGTGATGAAACAATCTTCTAATTCAAAAAATCAAATTCCTTCAAAAGATTCGTGATGAACTTCCTTTGTGAA
ATCAAAAGACATCATGCCTATACAGTATCTCCAACCCCAGGAAATAAGTAATTTGCCCAAATCTTTTATTTTGAACTGATCATGCAGAAAAGACATCAAG
GATTCAATTTCTTCTAGGTCAGTTCCAGTCAAGATTACATCATCAACATATACTGCAACAAAAACGAAAGAATAGTATCTTGTTCTTATATAAAACAGTG
AATAGTCACTGTTTGAGTGTGTGTATCCTCTATAACAAAGAATACTTGCCAACTTGCCATACCACTGTCTACTAGACTGTTTCAAGCCATACAATGATTT
TTTCAATTTACACACCATGTTAATACCATCTACACTAAGACCTTGTGGTAATGTCATATATACCATCTAGACTAAGACCTTGTGGTAATGTCATAAAAAC
TTCCTCTTTCGAATCACCATGAAGGAAGGCATTATTGACATTTAGTTGATACAAGTTCCAGCCTTTCTTAACAGCCAAAGTGA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.948487
Expected error %
0.1825
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g23160.1 Score 80 E Value 1e-35 Identity 42.90% Align. Length 736bp (94.00%) Frame 1
68417.m03342 protein kinase family protein contains Pfam domain PF00069: Protein kinase domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU89730.1| Score 110 E Value 6e-56 Identity 50.50% Align. Length 775bp (98.98%) Frame 1
putative polyprotein [Solanum tuberosum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_918613.1| Score 98 E Value 4e-42 Identity 44.40% Align. Length 769bp (98.21%) Frame 1
polyprotein [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0015O12
Clone
Clone name
hba-15o12
LE_HBa0015O12
C12HBa0015O12
P015O12
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found