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Clone Read LE_HBa0015O02_T7_130072

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0015O02_T7_130072
Primer
T7
ID from Seq. Facility
LE_HBa_015_O02-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
829 trimmed for vector and quality, 915 raw
Genbank Accession
DU051374
Sequence
>LE_HBa0015O02_T7_130072 (raw untrimmed)
TCTAACTCGGAACCAGGGGGATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGAAGCAGAGCCCTCATCTTTAAACGTTAGAAGCAGCAGCAAAGTTGA
AGTAATGAGGCACACTGTCTGGGGCTATTTCAGCCAACGAACAGGGCTCTTGTTCCAGCTTGAAGACACTCATCTTTTGCGAATTAAAGCCCCAGGAAAT
GATGTCTTTTGGGAAACAACAATGGAGTCACTAATCCTCGATTATCGAACAATAGATGGTGTTAATATTGCACATGCTGGTAGGACCTCTGTTTCTCTGT
TCAGGTTTGGTGAGAACACTGAAGGGCACACTAGGACAAGGATGGAAGAAGTTTGGACAATTGAAGAAGTTGATTTTAACATAAAGGGACTCTCCGCGGA
CTGTTTCTTACCGCCTAGTGACTTGATGAAAGAAGATGAAATGGGACATGATGTAAACAAGAAGTCAAGGTTGGGACTGAAGACTCCTAAAATAAGAAGT
TGTAGGAGAAGTGCATCTAAAATAATGTCTATTGATGAAGAAGATCTTGAAGACTATGAAGCAGATGAAGAATCTTGAAGTTTAAATTATATATTGCAAA
AGGGCATATTTAGTATTATTCTGTGGTCATTTTTGTACATGGAACACCACAGGATATACATATATATGTTACTATGTCATAAGTATTTCAAATAGGATTT
AACTTGTATTACACTAACACTAAAACAATTTTTCAGTGACTTGGTTGGAAGGTTGTTTCTTTTGACTGATATCATAAGGTCAAATAATTTGCTAATTAGA
GGCTAATCTCCTGTAAGTTTTGAGGAAGGATATGGTAACGTCTATGAAGCGATTACATTAACGTTTAAGCAATGAATAAAGAGGAGGACAGTGACATTCC
TATGTAGTATTAATC
>LE_HBa0015O02_T7_130072 (trimmed for quality and cloning vector)
AGCTTGAAGCAGAGCCCTCATCTTTAAACGTTAGAAGCAGCAGCAAAGTTGAAGTAATGAGGCACACTGTCTGGGGCTATTTCAGCCAACGAACAGGGCT
CTTGTTCCAGCTTGAAGACACTCATCTTTTGCGAATTAAAGCCCCAGGAAATGATGTCTTTTGGGAAACAACAATGGAGTCACTAATCCTCGATTATCGA
ACAATAGATGGTGTTAATATTGCACATGCTGGTAGGACCTCTGTTTCTCTGTTCAGGTTTGGTGAGAACACTGAAGGGCACACTAGGACAAGGATGGAAG
AAGTTTGGACAATTGAAGAAGTTGATTTTAACATAAAGGGACTCTCCGCGGACTGTTTCTTACCGCCTAGTGACTTGATGAAAGAAGATGAAATGGGACA
TGATGTAAACAAGAAGTCAAGGTTGGGACTGAAGACTCCTAAAATAAGAAGTTGTAGGAGAAGTGCATCTAAAATAATGTCTATTGATGAAGAAGATCTT
GAAGACTATGAAGCAGATGAAGAATCTTGAAGTTTAAATTATATATTGCAAAAGGGCATATTTAGTATTATTCTGTGGTCATTTTTGTACATGGAACACC
ACAGGATATACATATATATGTTACTATGTCATAAGTATTTCAAATAGGATTTAACTTGTATTACACTAACACTAAAACAATTTTTCAGTGACTTGGTTGG
AAGGTTGTTTCTTTTGACTGATATCATAAGGTCAAATAATTTGCTAATTAGAGGCTAATCTCCTGTAAGTTTTGAGGAAGGATATGGTAACGTCTATGAA
GCGATTACATTAACGTTTAAGCAATGAAT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.959779
Expected error %
0.5466
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g05840.1 Score 212 E Value 2e-55 Identity 21.90% Align. Length 482bp (58.14%) Frame 1
68418.m00642 expressed protein contains Pfam profile PF04788: Protein of unknown function (DUF620); expression supported by MPSS
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g55720.1 Score 160 E Value 8e-40 Identity 20.80% Align. Length 389bp (46.92%) Frame 1
68416.m06190 expressed protein contains Pfam profile PF04788: Protein of unknown function (DUF620)
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU44541.1| Score 212 E Value 9e-54 Identity 21.90% Align. Length 482bp (58.14%) Frame 1
hypothetical protein AT5G05840 [Arabidopsis thaliana] gb|AAX23909.1| hypothetical protein At5g05840 [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAB09678.1| Score 212 E Value 9e-54 Identity 21.90% Align. Length 482bp (58.14%) Frame 1
unnamed protein product [Arabidopsis thaliana] ref|NP_196203.1| expressed protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0015O02
Clone
Clone name
hba-15o2
LE_HBa0015O02
P015O02
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found